Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda13g01479	ATGCCACAATTCCCATTTCCCAGAGCGCTTCTCTCTCTCGCAGTCTCACTCTCACTCCAGTTACCGCCATCGCAGTCTTCATCTTCTGAAAAATCAATGGCTTCTGCTTTCACTTTTGGCGCCGCCGCCGCTTCATCCTCTTCTCGCTTCGTGTCCTCAGCTTCTAAAGCTACGGTCTCATTCTCTTCCTTTTCCCCTTCCCTTTTGCCTCACTCCTCCGGTCCATCCTCCTCCTCATCCGCTGGTTTCAGGTTGCTGAGATCTTCGCCTCGCATTTCTCGCTTATTTCTTAGTCAGAGGAGGTCGAATTCGTATGTTTCAAAAAGAGGAATCAACTCGGTTTCTTCTCCCAAATGCTTGGCTTGGTATGCTGAGCAGTTGAAGGGCGCCCGCGAAGATATCAAAGACCTTCTCAAAACGAAGTTTTGTCATCCTGTTTTGGTTCGCCTTGCTTGGCATGATTCTGGTACCTATAGCAAAGAAATAGAAGAGTGGCCGCAGAGAGGTGGAGCTAATGGAAGTCTGAGATTTGATGTGGAGCTGAAACATGCTGCCAATGCTGGTCTGGTGAATGCGGTGAAGCTTATTGAGCCAATCAAAGAGAAATATCCTTCTCTGACATATGCGGATTTGTTTCAGTTAGCCAGTGTTACAGCAATTGAGGATGGTGGGGGACCCAAAATTCCAATGAAATACGGTCGAGTGGATACCTCCGGACCAGAGCAATCCCCAGAAGAAGGGAGGCTTCCCGATGCTGGTCCTCCATCACCGGCTGGACATCTACGTGAAGTTTTCTATAGAATGGGCTTTGATGATAAGGAAATAGTCGCATTGTCAGGCGCACATACATTAGGTCGAGCAAGACCTGAGCGGAGTGGTTGGGGCAAACCAGAGACCAAATATACGAAAGATGGACCAGGAGCACCAGGAGGACAATCCTGGACAGTGCGATGGTTGAAGTTTGATAATTCTTATTTTAAGGATATCAAAGAAAGGAAAGATGAAGACTTACTGGTGTTACCTACAGATGCTGCTCTTTTTGAAGATCCATTGTTCAAGGTTTATGCTGAGAAGTATGCTGAAGATCAAGAAGCCTTCTTCAAAGATTATGCTGAGTCCCATGCCAAACTCAGCAACCTTGGAGCCAAATTCGATCCTCCCGAGGGTGTAGTTATTGATGACGGTCCTTCAAAACCTGGTGGAGAGAAGTTTGTGGCAGCCAAATACTCATCTGGAAAGAGGGAGCTATCAGAGACTATGAAGCAGAAGATTCGGGCAGAGTATGAAGCTGTTGGTGGAAGTCCAGATAAGCCTTTACAGTCTAACTATTTTCTAAATATCATGATTGTGATTGCTGTTTTGGCTCTTTTGACATCTCTGCTTGGAAACTAA	1392	46.34	MPQFPFPRALLSLAVSLSLQLPPSQSSSSEKSMASAFTFGAAAASSSSRFVSSASKATVSFSSFSPSLLPHSSGPSSSSSAGFRLLRSSPRISRLFLSQRRSNSYVSKRGINSVSSPKCLAWYAEQLKGAREDIKDLLKTKFCHPVLVRLAWHDSGTYSKEIEEWPQRGGANGSLRFDVELKHAANAGLVNAVKLIEPIKEKYPSLTYADLFQLASVTAIEDGGGPKIPMKYGRVDTSGPEQSPEEGRLPDAGPPSPAGHLREVFYRMGFDDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTVRWLKFDNSYFKDIKERKDEDLLVLPTDAALFEDPLFKVYAEKYAEDQEAFFKDYAESHAKLSNLGAKFDPPEGVVIDDGPSKPGGEKFVAAKYSSGKRELSETMKQKIRAEYEAVGGSPDKPLQSNYFLNIMIVIAVLALLTSLLGN	463

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
13	37700360	37704942	+	Bda000323.1	Bda13g01479	19610

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bda13g01479	463	Gene3D	-	130	383	-	-
Bda13g01479	463	ProSitePatterns	Peroxidases proximal heme-ligand signature.	274	284	IPR019793	-
Bda13g01479	463	Gene3D	Peroxidase, domain 2	252	375	-	-
Bda13g01479	463	PRINTS	Haem peroxidase superfamily signature	274	289	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Haem peroxidase superfamily signature	144	158	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Haem peroxidase superfamily signature	314	329	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Haem peroxidase superfamily signature	206	223	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Haem peroxidase superfamily signature	224	236	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Plant ascorbate peroxidase signature	343	367	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Plant ascorbate peroxidase signature	144	159	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Plant ascorbate peroxidase signature	123	143	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Plant ascorbate peroxidase signature	205	223	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	PRINTS	Plant ascorbate peroxidase signature	224	236	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	ProSiteProfiles	Plant heme peroxidase family profile.	145	402	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	MobiDBLite	consensus disorder prediction	286	309	-	-
Bda13g01479	463	PANTHER	L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED	39	463	-	-
Bda13g01479	463	PANTHER	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED	39	463	IPR044831	GO:0004601\|GO:0034599
Bda13g01479	463	SUPERFAMILY	Heme-dependent peroxidases	127	383	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	CDD	ascorbate_peroxidase	123	385	-	-
Bda13g01479	463	Pfam	Peroxidase	131	362	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Bda13g01479	463	MobiDBLite	consensus disorder prediction	234	256	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda13g01479	K00434	E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11]	-	zju:107421087	653.284

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Bda01g01443	Bda-Chr1:50363705	Bda13g01479	Bda-Chr13:37700360	0	dispersed
Bda09g01482	Bda-Chr9:46603136	Bda13g01479	Bda-Chr13:37700360	1.86E-63	dispersed
Bda13g01479	Bda-Chr13:37700360	Bda14g00613	Bda-Chr14:4606072	1.10E-76	dispersed
Bda01g01440	Bda-Chr1:50309099	Bda13g01479	Bda-Chr13:37700360	0	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi18g248	.	.	.	.	.	.	.	.	Cmo04g02484	Cmo15g00678	.	.	.	.	Sed01g3111	.	.	Bhi04g01899	Tan11g1263	Cmetu03g1741	.	Hepe02g2244	.	.	Cla08g00603	Cam08g1017	Cec08g0607	Cco08g0718	Clacu08g0728	.	Cre08g0536	.	Cone7ag1522	Cone17ag1289	Cone20ag0439	.	.	.	Cme03g00534	Blo17g00174	.	.	Bda13g01479	Bpe02g01647	Bpe14g00386	Bma01g00808	Bma02g00215	.	.	.	.	.	Car04g02298	Car15g00616	Cpe01g02059	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Lsi08g00443	.	Chy03g00786	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0003748	3	2	3	2	2	1	2	1	1	1	1	1	2	1	1	2	1	3	2	1	1	1	1	1	1	1	1	4	1	1	46