Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01480 ATGATAATCTCGATCGTTGTTTCAATTTTTTTATTGTCAGTCGTTGAGTCGGTAACGTCGCCGGCCGATCTCGATCACTCATCGATATTCGGTTCGACCGGTAGCTTGAAACAGACGGCAAACTCAAGCGATCGGAAAAACCTGAGTCTCGGAACCTTAGCTTCTCGGGTGGTGTCTCCGAGTTGCAAGATTTGGTCTGAAACGTGCTCGGAGGAGGTGCTCAGGCTGGCGAAGCGCCCGGAGACGGTTGAGTGGTTGAAGAAGGTCAGAAGGAGGATCCACGAGAACCCTGAGCTGGCCTTTGAAGAGTTCGAAACGAGCCGGTTGGTTCGAAACGAGCTGGACCGAATGGATGTTAGTTACACGTATCCGTTGGCAAAAACCGGCGTCCGAGCTTGGATAGGAACCGGCGGTCCACCTTTTGTGGCTCTGAGGGCTGATATGGACGCCCTTCCAATCCAGGAGGCAGTGGAATGGGAGCACAAAAGCAAAGTTGCAGGCAAAATGCATGCTTGTGGGCATGATGCTCATGTAGCCATGCTTCTTGGCGCTGCAAAGATCTTGAAGGCCCGTGAAAGTCTTTTGAAGGGGACTGTGATTTTACTCTTTCAGCCAGCGGAGGAGGCTGGAAATGGTGCAAAGAGAATGATGGGAGATGGGGCATTGAAGGATGTGGAAGCCATTTTTGCAGCTCACGTCTCGCATGAGCATCCCACTGGCGTTATAGGGTCGAGGCCAGGGCCTCTCTTAGCCGGTTGTGGCTTCTTCAAAGTTGTCATTACCGGCAAAAGAGGAAGAGCAGGGCATCCGCACCGCTCTCTTGACCCTGTTTTGGCAGCCTCAGCAGCAGTGATCAGCTTACAAGCCATCGTGTCTCGAGAAGCCAACCCATTGGACTCACAGGTTGTGTCCGTAACGTCCTTCAACGGTGGAAATAATCTCGACATGATACCCGATGTTGTGGAACTTCGCGGTACCTTTAGAGCTTTCTCCAACACAAGCTTCTATCAACTCCTCCGAAGAATAGAAGAGGTAATTGTGGAGCAGGCCGCTGTTTACAGATGCTCGGCAATGGTGGACTTCTTTGAAAAAGAATACACCATATATCCTCCGACAGTTAATGATGAGAAAATGTACGAACATGTCAAAAAGGTGGCTGTTGAGCTAGTGGGTCCAACAAATTTCAGAGTGGTTCCACCCATGATGGGTGCTGAGGACTTTTCTTTTTACTCAGAAGTTGTTCCAGCAGCCTTCTTCTACATAGGTGTGAGGAATGAAACTTTGGGATCTATTCACACAGGACACTCTCCGTACTTTATGATTGACGAAGACGCCCTTCCCGTTGGGGCTGCGACTCATGCCACCATTGCAGAAAGGTACTTGAATGAGCACGGATGGTCGTGA 1404 50.21 MIISIVVSIFLLSVVESVTSPADLDHSSIFGSTGSLKQTANSSDRKNLSLGTLASRVVSPSCKIWSETCSEEVLRLAKRPETVEWLKKVRRRIHENPELAFEEFETSRLVRNELDRMDVSYTYPLAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKARESLLKGTVILLFQPAEEAGNGAKRMMGDGALKDVEAIFAAHVSHEHPTGVIGSRPGPLLAGCGFFKVVITGKRGRAGHPHRSLDPVLAASAAVISLQAIVSREANPLDSQVVSVTSFNGGNNLDMIPDVVELRGTFRAFSNTSFYQLLRRIEEVIVEQAAVYRCSAMVDFFEKEYTIYPPTVNDEKMYEHVKKVAVELVGPTNFRVVPPMMGAEDFSFYSEVVPAAFFYIGVRNETLGSIHTGHSPYFMIDEDALPVGAATHATIAERYLNEHGWS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37733569 37735896 - Bda000324.1 Bda13g01480 19611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01480 467 Pfam Peptidase family M20/M25/M40 143 458 IPR002933 GO:0016787
Bda13g01480 467 Pfam Peptidase dimerisation domain 255 351 IPR011650 -
Bda13g01480 467 SUPERFAMILY Zn-dependent exopeptidases 81 463 - -
Bda13g01480 467 TIGRFAM amidohydrolases: amidohydrolase 88 449 IPR017439 GO:0016787
Bda13g01480 467 Gene3D - 251 369 - -
Bda13g01480 467 PIRSF Amidohydrol_AmhX 72 465 IPR017439 GO:0016787
Bda13g01480 467 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 28 464 - -
Bda13g01480 467 CDD M20_IAA_Hyd 86 461 IPR044757 GO:0009850|GO:0016787
Bda13g01480 467 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 464 IPR017439 GO:0016787
Bda13g01480 467 SUPERFAMILY Bacterial exopeptidase dimerisation domain 252 360 IPR036264 -
Bda13g01480 467 Gene3D Zn peptidases 88 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01480 K21604 IAR3, ILL6; jasmonoyl-L-amino acid hydrolase [EC:3.5.1.127] K14664 csv:101215789 747.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01569 Bda-Chr7:29140431 Bda13g01480 Bda-Chr13:37733569 4.72E-169 dispersed
Bda12g01081 Bda-Chr12:42528803 Bda13g01480 Bda-Chr13:37733569 3.54E-167 dispersed
Bda13g01057 Bda-Chr13:12340326 Bda13g01480 Bda-Chr13:37733569 1.72E-47 dispersed
Bda13g01480 Bda-Chr13:37733569 Bda12g01094 Bda-Chr12:42685361 7.68E-168 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35