Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01491 ATCTTAGCAGGAACAACACTCTCCGAGTGTTCAAGAGTGTTCACCATAATCAACAACTGCAAAGAGACAATATGGCCGGCGATTACTCCTGGAGAAAATTTCAACGGCGGTGGCTTTCAGCTAAAATCCCGCCAGTCCATCGTCCTGACCGCCCCAGTCGGCTGGTCCGGTCGGATATGGGGTCGGACTGGTTGCAACTTCGATAAAAATGGTAATGGCACTTGCCAAACCGGCTCCTGCGGCTCTTCCCTCAAGTGCAGAGCATCCGGCGAACCTCCGGCTTCTCTCGCCGAGTTCACTCTTGCTGCTTTGGATTTCTACGATGTCAGCCTCGTCGACGGCTTCAACTTACCCATGGCAGTGACTCCCATTAATGGCAAAGGAAACTGCAGCGTCGCCGGGTGTGATAGCGATCTAAGAACCAGTTGTCCGAAGGAACTTTCAGTGAAATCAGGGGGGAAAACTGTAGCTTGCCGGAGCGCCTGCGATGTTTTCAACACCGACAACTATTGCTGCAGAGGGGTATTCGGAAACCCTTCAACTTGTCAGCCGACGTATTATTCGAAGCAATTTAAGGAGGCTTGTCCGACTGCGTATAGCTACGCTTATGACGATCCGACCAGTATCTTCACTTGCTCCGGCACCGATTACATCATCAATTTCTGCTCTTCCAGGCAACAACCGGTGTGCAGTTACCATAACAACAAGCTTGTTTGCAGTAGATCAAATGGATTAAATTCCTTGATAGGAAGAAGATGGTGGTCTGTGATCGCTGCATTATTACTCTTTCTCACTCCATGGATTTATTAA 810 49.38 ILAGTTLSECSRVFTIINNCKETIWPAITPGENFNGGGFQLKSRQSIVLTAPVGWSGRIWGRTGCNFDKNGNGTCQTGSCGSSLKCRASGEPPASLAEFTLAALDFYDVSLVDGFNLPMAVTPINGKGNCSVAGCDSDLRTSCPKELSVKSGGKTVACRSACDVFNTDNYCCRGVFGNPSTCQPTYYSKQFKEACPTAYSYAYDDPTSIFTCSGTDYIINFCSSRQQPVCSYHNNKLVCSRSNGLNSLIGRRWWSVIAALLLFLTPWIY 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37824650 37825540 + Bda000334.1 Bda13g01491 19622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01491 269 PIRSF PR5 1 265 IPR001938 -
Bda13g01491 269 PANTHER OS03G0233200 PROTEIN 4 236 IPR001938 -
Bda13g01491 269 ProSiteProfiles Thaumatin family profile. 11 222 IPR001938 -
Bda13g01491 269 Pfam Thaumatin family 18 222 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 58 69 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 37 46 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 105 121 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 71 100 IPR001938 -
Bda13g01491 269 PRINTS Pathogenesis-related protein signature 13 25 IPR001938 -
Bda13g01491 269 SUPERFAMILY Osmotin, thaumatin-like protein 13 223 IPR037176 -
Bda13g01491 269 Gene3D Thaumatin 13 222 IPR037176 -
Bda13g01491 269 CDD TLP-PA 13 222 - -
Bda13g01491 269 SMART tha2 14 223 IPR001938 -
Bda13g01491 269 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 4 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01491 - - - zju:107421016 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00527 Bda-Chr8:5275995 Bda13g01491 Bda-Chr13:37824650 3.01E-48 dispersed
Bda13g01491 Bda-Chr13:37824650 Bda14g00980 Bda-Chr14:7959168 3.14E-63 dispersed
Bda13g01491 Bda-Chr13:37824650 Bda14g00973 Bda-Chr14:7837079 6.56E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38