Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01493 ATGGAGGATTTACAGAAAGTTCTAGAAAATGGCGGTCTAATGATTTCTACACTACAGGAGAAGGGTCGGTGCCTCTTTACCACCAGGGATTTCTATCCAGGAGAAGTTATAATAAGTCAGAAACCTTATGTTTCTGTGCCAAACAACTCCGGAAATGATTCGAGATGTGATAGATGTTTCGTTTCTATTAACCTTAAAAGGTGCTCTGGTTGCCATATTGTATGGTATTGTGGCAGTGGATGTCAGAAGTTGGAATGGAAGTTACATCATCTTGAATGTGGTGCTCTCTCCAGGCTTGACAAGGACAGACGGAAAGCCGTTACTTCATCCTTACGACTAATGCTCAAGCTCATCATTCGGAAAAAGTGTCAAAGTGAAAAGATCCTCCCTACAACCGCGACAGATAACTACAGTCTGGTAGAGGCGCTGGTGGCACATATGGCCAACATTGATGAAAAGCAAATGGTGATGTATGCTCAGATGGGTAATCTTGTGAGTTTGATACTCCAATGGCCTGATCTGAACATTAAAGAAATTGCAGAAAATTTTTCAAAGTTAGCATGTAACGCCCATACAATTTGCGATAGCGAACTCAGACCCTTAGGGACTGGACTATATCCAGTGATCTCCATTATTAACCACAGCTGCCTGCCGAATTCTGTTTTGGTATTTGAGGGAAAGACTGCTGTGGTGAGAGCTGTGGCAAAAATACCAAAAGGGGAAGAGGTGTTGATAAGTTACATCGAAACTGCGGGAAACACCATGGCTCGACAAAAGGCTCTGAAAGAACAATACTTTTTCAACTGCACCTGTATCCGCTGTGTTAAAGTGGGTCAACCTGATGATATCCAAGAAAGTGCAATTCTTGAAGGTTACAGCTGCAAGAATGAGAAATGCGAGGGTTACTTGCTCCGAAATTACGATGATAAGGGATTTATATGTCAGCAATGCAGGCTTTTTAGAAAAAAGGAAGAGATTAAACCCATTGCTGGGGAAATAAAATCACTGACTGACAAGGCTTTCGAGTTTATGACAGGGCGTTATTGTCAGGACGCTATTTCTGTTTATGAGAAAATTGAAAAACTTCAAAGGAAATTGTGCCATCCCTTTTCAATCAATTTGTTGCAAACTAGAGAAAAGCTTCTAAAGGTAATAGAGTTTTTATTTCCTCTTTCTATTATATATTTTACTAAAAAGAGGATCTTTCCCATTGTGCTGTGA 1221 40.46 MEDLQKVLENGGLMISTLQEKGRCLFTTRDFYPGEVIISQKPYVSVPNNSGNDSRCDRCFVSINLKRCSGCHIVWYCGSGCQKLEWKLHHLECGALSRLDKDRRKAVTSSLRLMLKLIIRKKCQSEKILPTTATDNYSLVEALVAHMANIDEKQMVMYAQMGNLVSLILQWPDLNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGKTAVVRAVAKIPKGEEVLISYIETAGNTMARQKALKEQYFFNCTCIRCVKVGQPDDIQESAILEGYSCKNEKCEGYLLRNYDDKGFICQQCRLFRKKEEIKPIAGEIKSLTDKAFEFMTGRYCQDAISVYEKIEKLQRKLCHPFSINLLQTREKLLKVIEFLFPLSIIYFTKKRIFPIVL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37991004 37995350 - Bda000339.2 Bda13g01493 19624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01493 406 SUPERFAMILY SET domain 10 253 IPR046341 -
Bda13g01493 406 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 385 - -
Bda13g01493 406 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 385 - -
Bda13g01493 406 Pfam SET domain 22 247 IPR001214 GO:0005515
Bda13g01493 406 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Bda13g01493 406 Gene3D SET domain 24 274 IPR046341 -
Bda13g01493 406 SMART set_7 11 254 IPR001214 GO:0005515
Bda13g01493 406 Pfam MYND finger 56 93 IPR002893 -
Bda13g01493 406 Gene3D - 55 105 - -
Bda13g01493 406 Gene3D - 106 190 - -
Bda13g01493 406 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Bda13g01493 406 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01493 K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD [EC:2.1.1.354 2.1.1.357] - rcu:8274129 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01493 Bda-Chr13:37991004 Bda14g01524 Bda-Chr14:24920104 1.20E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g318 . . . . . . . . . Cmo15g00718 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0461 . . . . Blo17g00189 . . Bda13g01493 . Bpe14g00371 . Bma02g00234 . . . . . . Car15g00650 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005114 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 8 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16938 PF00856 SET 1.60E-15 No_clan Bda TR