Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01500 ATGGTCCGCCTCACAGGGAAACATCCCTTCAATTCGGAGGCTCCATTAACCCGATTAATGAACCACGGCTTTATCACTCCGGTGCCTCTCCACTACGTCAGAAACCACGGCGCCGTTCCGAAGGCCAACTGGGAAACCTGGACCGTCGAGGTCTCCGGCCTCGTCAAACGGCCGACCAAATTCACGATGGATCAGCTGGTCTACGATCTCCCTTCCAGAGAATTCCCGGTGACCCTCGTCTGCGCCGGAAACCGACGGAAGGAGCAGAACATGGTCAAGCAAACTATTGGATTCAACTGGGGGGCGGCAGGCGTCTCCACCTCCGTGTGGCGCGGGGTTCCGTTGCGTTACGTCCTCAAGAAATGTGGCATCTTCAGCAGAAAAAAAGGCGGTCTAAATGTCTGCTTCGAAGGCGCCAAATTCAAATCTAAACAAAATATTACTCCGCGCATTAGAACAGGAATGATGAACAACTGCTGGTTCAGAGTTAAGACAAATGTTTGCAGACCACACAAGGGAGAGATCGGAATTGTGTTTGAGCATCCAACTTTACCCGGAAACCAGTCCGGCGGATGGATGGCCAGAGAGAAACACCTAGAGATTTCATCTGAAACTAGCCAGACCTTGAAGAAGAGCCTCTCCTCCCCCTTTATGAAAACTACCTCCAAGACGTACTCCATGTCGGAGGTCAAGAAACATAATAACGCTCAGTCGGCTTGGATCATCGTCCACGGCCATATCTATGACTGCACGCGCTTCCTCAAAGACCATCCCGGAGGTTCCGATAGTATTCTCATCAATGCTGGAACCGACTGTACTGAAGAATTCGACGCTATTCATTCCGACAAAGCCAAGAAGTTGCTCCAAGATTATAGAATCGGCGAGCTCATCTCCACTGGTTACACCTCCGACTCCTCGTCTTCTTCTCCCAATAACTCAGTCCACGGTGCTTCCAACATGCCCATCCCCTTAGCTCCGATCACTGAAATAGCTCCGACCAAACGGGTCGCCCTCGTTCCGCAAGAAAAAATCCCGTGTAAGCTCATTGCCAAGACTTCGCTCTCTCATGACGTTAGAGTTTTCCGATTCGCTTTACCCTCCGAGGATCAGCTTCTTGGGTTGCCTGTCGGGAAACACATATTTCTCTGTGCCGTCGTTGAAGGGAAGCTGTGCATGAGAGCTTACACTCCGACTAGCTCCATTGACGAAGTCGGTTTTTTCGATCTAGTGGTTAAAATCTACTTCAAGAACGTTCATCCAAAGTTCCCCAATGGGGGTCTCATGTCGCAGTATCTAGACTCTCTGCAACTCGGTTCGATCCTTGAAATAAAGGGTCCATTAGGGCACATAGAATACACCGGAAGAGGTAACTTCCTCGTCCATAAAAAACCGAAGTTCGCCAAAAAACTCGCCATGCTCGCCGGCGGAACAGGAATCACGCCGATCTATCAGGTAGTTCAAGCCATTTTGAAGGATCCTGAAGACGAAACAGAAATGTTCATCGTCTACGCAAACAGAACGGAAGACGACATTCTCCTAAAAGATGAGCTTGATTCGTGGGCCAAGAAGCACGAGAGATTGAAGGTTTGGTACGTTATTCAAGAGAGTATAAAAGAAGGATGGCAATACAGTCTTGGCTTCATCACCGAGGCAATCTTACGGGACCATATTCCCGATGGATCAGAGGGCTCTCTAGCGCTGGCGTGTGGGCCGCCGCCGATGATTCAGTTTGCAGTGCAGCCAAACCTGGAGAAAATGAACTACGATATCAAGAATTCGTTGCTTGTGTTCTAA 1794 49.61 MVRLTGKHPFNSEAPLTRLMNHGFITPVPLHYVRNHGAVPKANWETWTVEVSGLVKRPTKFTMDQLVYDLPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRYVLKKCGIFSRKKGGLNVCFEGAKFKSKQNITPRIRTGMMNNCWFRVKTNVCRPHKGEIGIVFEHPTLPGNQSGGWMAREKHLEISSETSQTLKKSLSSPFMKTTSKTYSMSEVKKHNNAQSAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFDAIHSDKAKKLLQDYRIGELISTGYTSDSSSSSPNNSVHGASNMPIPLAPITEIAPTKRVALVPQEKIPCKLIAKTSLSHDVRVFRFALPSEDQLLGLPVGKHIFLCAVVEGKLCMRAYTPTSSIDEVGFFDLVVKIYFKNVHPKFPNGGLMSQYLDSLQLGSILEIKGPLGHIEYTGRGNFLVHKKPKFAKKLAMLAGGTGITPIYQVVQAILKDPEDETEMFIVYANRTEDDILLKDELDSWAKKHERLKVWYVIQESIKEGWQYSLGFITEAILRDHIPDGSEGSLALACGPPPMIQFAVQPNLEKMNYDIKNSLLVF 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38038976 38042326 - Bda000346.1 Bda13g01500 19631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01500 597 Pfam Oxidoreductase molybdopterin binding domain 36 143 IPR000572 -
Bda13g01500 597 CDD cyt_b5_reduct_like 346 592 - -
Bda13g01500 597 PRINTS Eukaryotic molybdopterin domain signature 24 40 IPR008335 GO:0016491
Bda13g01500 597 PRINTS Eukaryotic molybdopterin domain signature 77 88 IPR008335 GO:0016491
Bda13g01500 597 PRINTS Eukaryotic molybdopterin domain signature 2 16 IPR008335 GO:0016491
Bda13g01500 597 PRINTS Eukaryotic molybdopterin domain signature 88 100 IPR008335 GO:0016491
Bda13g01500 597 PRINTS Eukaryotic molybdopterin domain signature 103 118 IPR008335 GO:0016491
Bda13g01500 597 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 441 590 IPR039261 -
Bda13g01500 597 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 140 IPR001834 GO:0016491
Bda13g01500 597 PANTHER NADH-CYTOCHROME B5 REDUCTASE 153 597 IPR001834 GO:0016491
Bda13g01500 597 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 53 88 IPR022407 GO:0043546
Bda13g01500 597 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 341 453 IPR017927 GO:0016491
Bda13g01500 597 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 253 260 IPR018506 GO:0020037
Bda13g01500 597 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 222 297 IPR001199 -
Bda13g01500 597 Gene3D - 217 299 IPR036400 -
Bda13g01500 597 Gene3D - 1 158 IPR036374 -
Bda13g01500 597 Gene3D Translation factors 333 447 - -
Bda13g01500 597 Pfam Oxidoreductase NAD-binding domain 472 579 IPR001433 GO:0016491
Bda13g01500 597 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 3 140 IPR036374 -
Bda13g01500 597 Gene3D - 448 597 IPR039261 -
Bda13g01500 597 SUPERFAMILY Riboflavin synthase domain-like 336 453 IPR017938 -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 372 383 - -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 438 452 - -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 393 400 - -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 471 490 - -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 565 573 - -
Bda13g01500 597 PRINTS Cytochrome B5 reductase signature 509 520 - -
Bda13g01500 597 PRINTS Cytochrome B5 signature 247 257 IPR001199 -
Bda13g01500 597 PRINTS Cytochrome B5 signature 272 279 IPR001199 -
Bda13g01500 597 PRINTS Cytochrome B5 signature 257 271 IPR001199 -
Bda13g01500 597 PRINTS Cytochrome B5 signature 284 296 IPR001199 -
Bda13g01500 597 PANTHER NITRATE REDUCTASE 1 140 - -
Bda13g01500 597 PANTHER NITRATE REDUCTASE 153 597 - -
Bda13g01500 597 Pfam Cytochrome b5-like Heme/Steroid binding domain 227 296 IPR001199 -
Bda13g01500 597 Pfam Oxidoreductase FAD-binding domain 346 452 IPR008333 -
Bda13g01500 597 SMART Cyt_b5_2 225 297 IPR001199 -
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 541 557 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 425 434 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 497 506 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 509 520 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 565 573 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 471 490 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 256 266 IPR001709 GO:0016491
Bda13g01500 597 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 393 400 IPR001709 GO:0016491
Bda13g01500 597 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 220 299 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01500 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - tcc:18592259 780.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00462 Bda-Chr12:5761547 Bda13g01500 Bda-Chr13:38038976 1.84E-13 dispersed
Bda12g00464 Bda-Chr12:5780259 Bda13g01500 Bda-Chr13:38038976 2.71E-17 dispersed
Bda13g00491 Bda-Chr13:5773805 Bda13g01500 Bda-Chr13:38038976 3.23E-18 dispersed
Bda13g01500 Bda-Chr13:38038976 Bda03g01493 Bda-Chr3:53238692 1.45E-41 dispersed
Bda13g01500 Bda-Chr13:38038976 Bda05g00993 Bda-Chr5:58358234 3.86E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90