Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01503 ATGACTGGTGGCCGATGTCACCGGCGGAAGAAAATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACTGAGGAACGGCCTTGCCCAGTTTCTAGGGTTCCGGCGAGAATTCCGGGGTCTCAGCCGGGAATTACTGACGGTGGTGCTTCTGTGTGCATTGATTTACTCTCGCAAGCGACTAAGATTCTGTCTGAGAGCTCGCCGTTTGATGTTGCTGACGAAACTTCAGCTTCCACAGTGCCCACTTTACCAATTGGATTAGCCAACTTTTTAACGAGGCAGTCGGATAGTAGAAAACGGCATAAGAAGTCTCATCCGGTAGACGTTAAAAAGTCGGCTGTTGAGAAGTCTGTTGAACTCCGGGCATTTTGCTCTAAGCACTCAAAAGTAGAGAATGCTGACAGTCCACAAGTAGAAGATCCTTCAGAACCCGTTCTCAATGATTCTCTTGTTGTCAACCACCTTCCAGTGACGCTGTCAATTAACAGACCTCAAAAGTTGGTGATTGGTCGAAGAAATGGAGATAATATGTCAGCCTGTGTGGATTCTTTGGATGAAAATTCTGAAAAATCTGTTGATAGTGATTCACAAGAGATGGAATTTTCAGATTCCAAACTTCTTCCAGAACTTGCATCTGATCGTTTATCGCAAACTGTGCAGTTAATTGATCGAGGAAAAGTCAATGTGAACGACGTCGCGGTGGAGATTGGTGTATCACCCGATACATTGATCTCAAAACTTACTGGTAAAAACTTGTCTCCGGACCTAGGATCCAAAATAGTTAATTGGCTTCAAAATCATGCTTTTATGGGTACCTTGCAAAAAAATAGGAAACTGAGAATAAAATCTGCTGCCTTATCCAAGGCAACGGATGCAGCTGTTGATAAGCCTAGTGCATTACAAGGGCCTGAGTCTGATGTTCCGGATCCAGTCAATGTTATGTCGGTTGTGCCACCGAGAAGAACCAAAAGCGATATGAGAGTTTTGAAAGATGAGCAAGTAACTGGCTCGTCTGAGGAACTTTTAGGTGATCATGAGTTGGCGATAGAAAATGTTTGCATGAATCAACATGCAAGTGAAAAACCAGAAAATTTGAGTAAGTATTGCATTGTAGAGTCAGAATTCTCGGGGAAACTTTCAGAAGGAGATCGAATTGGGGAGCTTGTTGTTACAACCCCCAGTTTTTCATTGAGTGCAGATTGGGAAAATGTTATTTCTGAAGAAGTAAAACCTGCTATCAGTGATACGGTGAAACCAGGTGGATCCTCTAGTTTTTATATTCACCCATATATACAACATAAATTGTTGCAAGTTCAGAGAGGGACACATCTGAAGAATGCAGTACTAGATTCTGCTGGTAAGGTCTCTTTAAAAATGTGTCTTTCAGAATCATCATCAAGTGTCAGTTTAATTCACCAAAATCATCACTCGTGCAATGGCTTTGACTTGAAATCTAATGGATCAATTGTGGACCAGTTGGCAAAGGCTAGGGAAATGGACGTTCTAAAATTTTCGCCCAAAGATGAATTGGAAGGAGAAATCATTTACTATCAGAATAGATTACTTGGCAATGCAGAAGCAAGAAAGAAGTTAACTGAACGCTTGACTTTTAATGTAACTAAGAGTCTGCCAAAGGAGATTGATACAGCAAGAAGTCGAATATGGGATGTGGTTCTTGTTAACCAGTATCTTTCTCAGCTTAGGGAGGCAAAGAAACAAGGCAAGAAGGAGAGAAAACATAAGGAGGCACAGGCTGTCTTGGCTGCTGCAACTGCTGCTGCTGCAAATTCTTCGAGGTCATCTCAGAGAAAAGATGTTTTCGAAGAATCTGCTCATCTGGAGCTGATGCCCCAAGCCAAAGAAGCACTTTCAACGGTTGCTCTGCCTAAACTTCCATCAGACAAGCAATCAGAATTTGTTCAATCGATCTCTGGATCTTCCAAAGGTCATCCTCGATCATGCGATATCTGTAGACGTCCTGAGTCTATATTGAAGCCAATCTTAGTCTGTTCCAGTTGCAAGGTTGCAGTTCACTTGGACTGCTATTGTAGTGTTAAAGAGTCTTCAGGACCTTGGAATTGTGAATTATGTGAGGACTTATTGGCATCCAGAGGTTCTGGAGGATCGACTATTAGTTTTTGGGAGAAATCAAATTTTCTTGTGGAGTGTGGTTTATGTGGTGGCACCACTGGTGCTTTCCGGAAATCAACTGGTGGACAATGGGTCCATGCCTTTTGTGCTGAGTGGGTCCTGGAGTCAACATTCAGAAGGGGACAGGCAAATTCTGTGGAAGGAATGGAGACTGTTTTAACTGGAGTTGATATTTGCTACGTCTGTTGTCGCAAATATGGTGTCTGCATAAAGTGCAACTACGGTCATTGTCAGTCTACTTTCCATCCTTCCTGTGCTAGGACCGCGGGTCTCTTCATGAATATAAAGACTTCTGGTGGCAAGGTGCAGCACAAAGCTTACTGTGAAAAGCATAGCTCAGAGCAGAGGGCAAAGGCTGAAAACCAAACTTATGGAACTGAGGAGTTGAAAAGAATCAAGCATATCAGGGTTGAGTTAGAAAGGTTACGTCTTCTTTGTGAGAGGATCATCAAGCGTGAAAAGATAAAGCGCGACTTGGTTCTTTGTTCACATGACATTTTTATTTTCAAAAGAGACCATGCAGCAGGGGCTGCAATTGGACGTAATCCTCGTATGAATCATGAGGTTAGCACTGAATCGGCCACAACATCTCTGAAGGGACAAACAGATGATTTCAAATCCCGCAGTGATGCTGTCCAGAGATCAGATGATACAACTGTGGACAGCTCAGTTTCAGTCAAGCGTAGGACAAAAGTTCCTATCTCTGTAGACACAGACCAAAAGACAGATGACGACAGTTCCACTTCCAAAAACCCTTTTCCTCAATTTTCAGGTAAGCAGATTCCTAACAGAAGACCTTCAGCTGCAGATGGAGGACATCGGTTAAGATCTAGAAAGCAGGCCGAAACTTTTCAAAAGGAGTTGTTGATGACTTCAGATCAAGCATCAATGAAGAACTCACTCTTACCAAAACAGTATCTATATGTTCCTGCTGATATGCTTACTAAGGAGAAGCAGATTAGCCAGGATGATACTGCTCAAAAGCCAGCAGAAAGTGAAGGATAA 3156 42.97 MTGGRCHRRKKMMGRGADGGCGTEERPCPVSRVPARIPGSQPGITDGGASVCIDLLSQATKILSESSPFDVADETSASTVPTLPIGLANFLTRQSDSRKRHKKSHPVDVKKSAVEKSVELRAFCSKHSKVENADSPQVEDPSEPVLNDSLVVNHLPVTLSINRPQKLVIGRRNGDNMSACVDSLDENSEKSVDSDSQEMEFSDSKLLPELASDRLSQTVQLIDRGKVNVNDVAVEIGVSPDTLISKLTGKNLSPDLGSKIVNWLQNHAFMGTLQKNRKLRIKSAALSKATDAAVDKPSALQGPESDVPDPVNVMSVVPPRRTKSDMRVLKDEQVTGSSEELLGDHELAIENVCMNQHASEKPENLSKYCIVESEFSGKLSEGDRIGELVVTTPSFSLSADWENVISEEVKPAISDTVKPGGSSSFYIHPYIQHKLLQVQRGTHLKNAVLDSAGKVSLKMCLSESSSSVSLIHQNHHSCNGFDLKSNGSIVDQLAKAREMDVLKFSPKDELEGEIIYYQNRLLGNAEARKKLTERLTFNVTKSLPKEIDTARSRIWDVVLVNQYLSQLREAKKQGKKERKHKEAQAVLAAATAAAANSSRSSQRKDVFEESAHLELMPQAKEALSTVALPKLPSDKQSEFVQSISGSSKGHPRSCDICRRPESILKPILVCSSCKVAVHLDCYCSVKESSGPWNCELCEDLLASRGSGGSTISFWEKSNFLVECGLCGGTTGAFRKSTGGQWVHAFCAEWVLESTFRRGQANSVEGMETVLTGVDICYVCCRKYGVCIKCNYGHCQSTFHPSCARTAGLFMNIKTSGGKVQHKAYCEKHSSEQRAKAENQTYGTEELKRIKHIRVELERLRLLCERIIKREKIKRDLVLCSHDIFIFKRDHAAGAAIGRNPRMNHEVSTESATTSLKGQTDDFKSRSDAVQRSDDTTVDSSVSVKRRTKVPISVDTDQKTDDDSSTSKNPFPQFSGKQIPNRRPSAADGGHRLRSRKQAETFQKELLMTSDQASMKNSLLPKQYLYVPADMLTKEKQISQDDTAQKPAESEG 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38110393 38118800 + Bda000352.1 Bda13g01503 19634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01503 1051 SUPERFAMILY FYVE/PHD zinc finger 649 698 IPR011011 -
Bda13g01503 1051 Coils Coil 564 584 - -
Bda13g01503 1051 CDD ePHD 723 828 - -
Bda13g01503 1051 SMART PHD_3 775 829 IPR001965 -
Bda13g01503 1051 SMART PHD_3 653 698 IPR001965 -
Bda13g01503 1051 MobiDBLite consensus disorder prediction 897 995 - -
Bda13g01503 1051 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 111 1046 - -
Bda13g01503 1051 CDD PHD_SF 653 697 - -
Bda13g01503 1051 ProSiteProfiles Zinc finger PHD-type profile. 651 700 IPR019787 -
Bda13g01503 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 719 831 IPR013083 -
Bda13g01503 1051 PANTHER PHD FINGER PROTEINS 111 1046 - -
Bda13g01503 1051 MobiDBLite consensus disorder prediction 964 979 - -
Bda13g01503 1051 MobiDBLite consensus disorder prediction 903 919 - -
Bda13g01503 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 704 IPR013083 -
Bda13g01503 1051 MobiDBLite consensus disorder prediction 1 23 - -
Bda13g01503 1051 ProSitePatterns Zinc finger PHD-type signature. 654 697 IPR019786 -
Bda13g01503 1051 ProSiteProfiles Extended PHD (ePHD) domain profile. 720 829 IPR034732 -
Bda13g01503 1051 Pfam PHD-finger 666 698 - -
Bda13g01503 1051 Pfam PHD-zinc-finger like domain 722 828 - -
Bda13g01503 1051 MobiDBLite consensus disorder prediction 949 963 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01503 - - - csv:101212864 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01503 Bda-Chr13:38110393 Bda05g00120 Bda-Chr5:5923931 4.41E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44