Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01522 ACTGGGGAAATGGACTTGATTGAAGGAGTCGGAGAGAGCTCCTCACCGCCTGGAAGCTTCGGAGGTTACTCGAACCACGATGTCCGACTTGATGTTTATAATCGGCTGGTGGAGACTAGACACGAGGACGCTGTGTGTAATCCTGAGTTTCGTGAGCAGTTGGATGTTCATTTCAATCGTTTGCCTCCTAGTTATGGATTTGATGTCAATATGGAGAGAGTGGAGGATGTTCTGTTACATAAAAAGCTTCTTGCTTTAGCAAAGAACCCAAAGAATCGACCCGTCTGTCATATTCGTTTTTTAGAGGTACAACATTTGTCCATTGCCCAGAAAATTGAGGAGAAACTTCAAATTACTAAAGGGTTCCGAGGACCCATGGGAGGGTTTGGATCGCGAATATCTGGGAGCTCTAAAACAATTTTGGTACCAAATGACCATAAAGGTAATCGAGATACTGAAACTGGGAGACCTTCGTTATTCGGAGGGCCGACAAGGCGTTTAACAGACAGTGAAGCTCGACATCGTAGAGAGCGTGGGCTTTGTTATCGTTGTGATGAGAAATGGGCTCCTGGCCTCCGGTGCAAGAAACGCAAGTTGATGTTATGCAGGCAAGATAACTCGTATGTTTTTATTCACGAAGTTATATTTTCTACGATCGACAAACCTAAGCTTCTAAGCCAGCTTTCTTCATTGCTTTCTGATATAGGACTTAACATTCGCGAAGCACATGTATTCTCGACAAATGATGGCTATTCCTTGGATGTGTTTGTGGTGGATGGATGGCCTATTGAGGTATTGATCTGTAATTTGCTTTATAGTATTTTTTGCTCGGAATTTTTATTGGGATCATGGTCTTGTTTCTCTCATTCTCATTCAGACGTGGATAAAACATTGGCATCATTACCAAAATGTGGGGGCTGGGAAATAGACAGAAGGTTATTAAAGATTGGTGAGCGAATTGCATCAGGATCCTGTGGAGATTTGTACCGAGGAGTATATCTTGGTCAAGATGTAGCTGTTAAAATTCTTCGATCCGAACATTTAAATGATGCTTTGGAAGATGAATTTGCTCAAGAAGTGGGGATACTGAGAGAGGTCCAACATAAAAATGTTGTACGCTTCATTGGAGCGTGCACAAAGTCTCCTCATTTGTGCATAGTAACAGAATATATGCCAAGAGGAAGCCTTTACGATTATTTGCATAAGAATCACAATGTCTTAAAGCTCTCTCAAATATTGAAATTTGCTATTGGTGTCTGCCAAGGAATGGAGTATTTGCATCTAAACAACATCATTCATAGAGATTTAAAAACGGCAAATTTGCTAATGGACACTGAAAATGTTGTTAAGGTTGCAGATTTTGGCGTTGCCCGATTCCAAAATGAAGAGGGAGAGATGACTGCTGAAACCGGAACCTATAGATGGATGGCGCCTGAGATCATAAACCACCAGCCATATGATCAGAAGGCAGATGTTTTCAGTTTTGCTATTGTACTGTGGGAACTAGTGACTGCAAAGGTTCCTTATGATACCTTGACTCCTCTGCAAGCTGCTCTTGGAGTGAGACAGGATCTTCCTGAAAATGCACACCCCAAACTGTTGGAACTAATGCAGAGATGTTGGGACGATGTTCCTACAAACCGGCCTTCATTCACCGAGATAAAAGCTAAACTTGAAAATCTACTCAAACTTCAGGTATGTTTGAATTTTTTTTTTGGCTTTAAAGTTTTTATTTTTGAATCTCTTCAAATACATGTTCTCTCCAGAAATTTCCCCTCCTTATTCAAATCTTTTTTAATCTAA 1803 40.93 TGEMDLIEGVGESSSPPGSFGGYSNHDVRLDVYNRLVETRHEDAVCNPEFREQLDVHFNRLPPSYGFDVNMERVEDVLLHKKLLALAKNPKNRPVCHIRFLEVQHLSIAQKIEEKLQITKGFRGPMGGFGSRISGSSKTILVPNDHKGNRDTETGRPSLFGGPTRRLTDSEARHRRERGLCYRCDEKWAPGLRCKKRKLMLCRQDNSYVFIHEVIFSTIDKPKLLSQLSSLLSDIGLNIREAHVFSTNDGYSLDVFVVDGWPIEVLICNLLYSIFCSEFLLGSWSCFSHSHSDVDKTLASLPKCGGWEIDRRLLKIGERIASGSCGDLYRGVYLGQDVAVKILRSEHLNDALEDEFAQEVGILREVQHKNVVRFIGACTKSPHLCIVTEYMPRGSLYDYLHKNHNVLKLSQILKFAIGVCQGMEYLHLNNIIHRDLKTANLLMDTENVVKVADFGVARFQNEEGEMTAETGTYRWMAPEIINHQPYDQKADVFSFAIVLWELVTAKVPYDTLTPLQAALGVRQDLPENAHPKLLELMQRCWDDVPTNRPSFTEIKAKLENLLKLQVCLNFFFGFKVFIFESLQIHVLSRNFPSLFKSFLI 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38266301 38280590 + Bda000370.1 Bda13g01522 19653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01522 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Bda13g01522 600 Gene3D Phosphorylase Kinase; domain 1 303 391 - -
Bda13g01522 600 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 110 - -
Bda13g01522 600 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 202 564 - -
Bda13g01522 600 CDD STKc_MAP3K-like 320 554 - -
Bda13g01522 600 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 110 - -
Bda13g01522 600 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 202 564 - -
Bda13g01522 600 SUPERFAMILY ACT-like 212 260 IPR045865 -
Bda13g01522 600 SUPERFAMILY Protein kinase-like (PK-like) 307 584 IPR011009 -
Bda13g01522 600 ProSiteProfiles ACT domain profile. 213 285 IPR002912 -
Bda13g01522 600 MobiDBLite consensus disorder prediction 140 171 - -
Bda13g01522 600 SMART serkin_6 314 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01522 600 ProSiteProfiles Protein kinase domain profile. 314 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01522 600 Gene3D Transferase(Phosphotransferase) domain 1 392 568 - -
Bda13g01522 600 MobiDBLite consensus disorder prediction 1 21 - -
Bda13g01522 600 Pfam Protein tyrosine and serine/threonine kinase 314 558 IPR001245 GO:0004672|GO:0006468
Bda13g01522 600 PRINTS Tyrosine kinase catalytic domain signature 425 443 IPR001245 GO:0004672|GO:0006468
Bda13g01522 600 PRINTS Tyrosine kinase catalytic domain signature 529 551 IPR001245 GO:0004672|GO:0006468
Bda13g01522 600 PRINTS Tyrosine kinase catalytic domain signature 471 481 IPR001245 GO:0004672|GO:0006468
Bda13g01522 600 PRINTS Tyrosine kinase catalytic domain signature 388 401 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01522 - - - mnt:21400873 689.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01522 Bda-Chr13:38266301 Bda14g00632 Bda-Chr14:4747419 8.56E-140 dispersed
Bda06g00722 Bda-Chr6:9916437 Bda13g01522 Bda-Chr13:38266301 1.33E-34 transposed
Bda14g01352 Bda-Chr14:15818990 Bda13g01522 Bda-Chr13:38266301 7.59E-34 transposed
Bda01g01431 Bda-Chr1:50235432 Bda13g01522 Bda-Chr13:38266301 0 wgd
Bda01g01392 Bda-Chr1:49814324 Bda13g01522 Bda-Chr13:38266301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70022 PF07714 PK_Tyr_Ser-Thr 2.00E-69 CL0016 Bda PK