Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01525 ATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACCTCAAGTCACGGTTCTACGCCTGATGATTATGATGCTCTGGGTGATGTATACATATGGGGTGAAGTTATTAGTGATAATGTGGTCAAGGTTGGAGCTGACAAAAGTACTAACTATGTGACTTTAAGAACAGATGTGCTTCTTCCCAAGCCACTAGAGTCCAATGTAGCATTGGACGTTCAACATATATCCTGTGGGGTTATGCATTCTGCTCTAGTCACGAGGCAGGGGGAAGTCTTTACGTGGGGAGAGGAATCTGGAGGGAGGCTTGGCCATGGTGTCGGGAAAAATGTTATTCGGCCTTGTACTGTTGAATCATTAGCAGCCACTAGTGTTGATTTTGTTTCTTGTGGGGAGTTCCATACTTGTGCTGTTACAATGGCTGGGGAACTTTATACGTGGGGAGATGGCACACATTATGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGCCATTGGATACCAAAGAGGGTTTCAGGTGCGCTTGAAGGGCTTCAAATTGCCTCAGTGACTTGCGGACCTTGGCATACAGCCTTGATAACATCAATGGGACAGCTCTTTACATTTGGCGTTGGAACATTTGGTGTATTGGGTCATGGAGACAGAGAAAGTGTTTCATACCCTAGAGAAGTGGAATCCTTATCAGGCTTAAGGACAATTGCCGTTGCATGCGGGGTATGGCATACTGCTGCCGTTGTCGAAGTTATTGTGACACAATCTAGTTCCAGCGTTTCATCAGGGAAGTTATTTACTTGGGGCGATGGAGATAAGAATCGCCTGGGCCAAGGAGATAAAGATCCCCGGCTTAAACCAACTTGTGTACCTTCATTAATCGATTATAATTTTCACAAAATTTCTTGTGGTCACAGTTTAACCGTCGGCTTAACCACGTCCGGACAAGTTTTCACTATGGGGAGTCCTGTTTACGGTCAGCTCGGGAATCCTAGCACAGATGGGAAGCTACCATGCTTGGTAGAAGATAAGCTTGTAGGAGAATCCATGGAAGAAGTTGCATGCGGTGCATATCATGTTGCGGTACTAACTTGTAGAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAATACCCACTTTGGTTGAATGTTTGAAAGATAGACATGTCAAATATATTTCTTGTGGTTCTAACTATATGGCTGCCATTTGTCTTCATAAATGGGTTTCAAGTGCCGAGCAGTCGCAGTGTTCTGCTTGTAGACAGACATTTGGATTTACTCGAAAAAGGCACAACTGCTATAACTGTGGGTTTGTGCACTGCCATTCATGCAGTTCCAGAAGAGCATTAAGAGCTGCACTGGCTCCTAATCCTGCTAAACCATATCGCGTATGTGACTCTTGTTATTCAAAATTGAATAACGTGTCTGAAGTTAGTAATAATAGTAGGAAAAATGCAATACCTCGCCTTTCGGGTGCGAACAAGGATAGATTAGAGAAGAATGAGCTTAAGGTGGCTGATTCTATGCCTTCCAATTTGGATTTAATAAAGCAATTAGATAACAAAGCAGGCAAACTAGGAAGGAAGCCAGATACATACTCCCTCGTTCGCAACACTCAAGGACCTTTCTTGGTGCAGCATAAAGATGTCGTTTTACCCATGGCTGTTGATTTGCGACGAATGGCTCCCAAGCCTATTCTTATGGCCCATGGAGTAAATAGATCCGTGTCACCTCTCTCAAAGAGAAGTCCTCCCCGATCGGCTACTCCTGTTCCTACAGAATCGGGACTTTCTTTCTCCAAAAGTGTTTCTGATAGCTTGAAGAGAACCAATGAACTTTTGAATCACGAAGTGTCAAGGTTACGAGCACAGGTGGAGAGCCTGAGCCAGAGATATGAGCTCCAGGAACTAGAGCTTCAAAGATCGATGAAAAAGGCACAAGAAGCACAGGCTTTAGTGGCTGATGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTCATTAAATCACTTACAACTCAGCTCAAGGATATGGCAGAGAGGTTACCTGCTGGAGTTAACCAAACTGACGTGAGGCCGATACATCCTCCCAACGGTTTGGAACAAAATGGTATCCACTATTTAGAAACAAATGGAAAGCGCTATTCAAGAACCGATTCCATTAGCAGCTTCGCGTCGGATTCTCCCTCAGCCATAGACACTGACGCATGGCAAGGAAGTCGAGGCTTAGCCACTTCTCCAAGAGAGAGCAGTGACATCAATCTTGAACAAGAGCAAAAGCTGCTGCCCTCCAATGGGATTGAGGGTCGTAAAGATTTTAGATTGCCAGATGGAAGTAGAATAAAAGAGGAACTTGATGGTCGCTCTGAACCCACCAGCAATAATGAGAATAGTTTGAAATCCAGGAATTCTACTTTGGCTATAAATGGTAGTCAAGTTGAGGCAGAATGGATGGAACAATTCGAACCTGGTGTGTACATTACTCTCGCTGCATTGCAAGATGGAGCAAGAGACATTAAACGAGTGCGCTTCAGCCGAAGACGATTTGAGGAGCGTCAAGCTGAGAATTGGTGGGCTGAAAACCGGGAGAGGGTGTACGAGAAATACAACGCTCGTGGGGCTGACAAGTCTTCAATTTCGAGTCAAGCCGGTGGGAGATCCGAGGGAGGAGCTATCTCACCCTCTTCCCTACAACCTTAG 2745 44.85 MQVKGSGSDAFRVSVSSAPSTSSHGSTPDDYDALGDVYIWGEVISDNVVKVGADKSTNYVTLRTDVLLPKPLESNVALDVQHISCGVMHSALVTRQGEVFTWGEESGGRLGHGVGKNVIRPCTVESLAATSVDFVSCGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGVGTFGVLGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGQGDKDPRLKPTCVPSLIDYNFHKISCGHSLTVGLTTSGQVFTMGSPVYGQLGNPSTDGKLPCLVEDKLVGESMEEVACGAYHVAVLTCRNEVYTWGKGANGRLGHGDVEDRKIPTLVECLKDRHVKYISCGSNYMAAICLHKWVSSAEQSQCSACRQTFGFTRKRHNCYNCGFVHCHSCSSRRALRAALAPNPAKPYRVCDSCYSKLNNVSEVSNNSRKNAIPRLSGANKDRLEKNELKVADSMPSNLDLIKQLDNKAGKLGRKPDTYSLVRNTQGPFLVQHKDVVLPMAVDLRRMAPKPILMAHGVNRSVSPLSKRSPPRSATPVPTESGLSFSKSVSDSLKRTNELLNHEVSRLRAQVESLSQRYELQELELQRSMKKAQEAQALVADESAKSKAAKEVIKSLTTQLKDMAERLPAGVNQTDVRPIHPPNGLEQNGIHYLETNGKRYSRTDSISSFASDSPSAIDTDAWQGSRGLATSPRESSDINLEQEQKLLPSNGIEGRKDFRLPDGSRIKEELDGRSEPTSNNENSLKSRNSTLAINGSQVEAEWMEQFEPGVYITLAALQDGARDIKRVRFSRRRFEERQAENWWAENRERVYEKYNARGADKSSISSQAGGRSEGGAISPSSLQP 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38305052 38308168 - Bda000373.1 Bda13g01525 19656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01525 914 SUPERFAMILY RCC1/BLIP-II 34 424 IPR009091 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 592 618 - -
Bda13g01525 914 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 489 IPR017455 -
Bda13g01525 914 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 83 93 IPR000408 -
Bda13g01525 914 Gene3D - 13 259 IPR009091 -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 318 IPR000408 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 1 28 - -
Bda13g01525 914 Pfam Transcription factor regulating root and shoot growth via Pin3 829 884 IPR013591 -
Bda13g01525 914 Coils Coil 676 696 - -
Bda13g01525 914 SUPERFAMILY FYVE/PHD zinc finger 423 497 IPR011011 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 591 618 - -
Bda13g01525 914 MobiDBLite consensus disorder prediction 734 767 - -
Bda13g01525 914 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 190 200 IPR000408 -
Bda13g01525 914 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 892 - -
Bda13g01525 914 SMART fyve_4 422 490 IPR000306 GO:0046872
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 204 255 IPR000408 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 806 820 - -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 149 203 IPR000408 -
Bda13g01525 914 Gene3D - 260 420 IPR009091 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 885 914 - -
Bda13g01525 914 Pfam FYVE zinc finger 423 489 IPR000306 GO:0046872
Bda13g01525 914 MobiDBLite consensus disorder prediction 798 820 - -
Bda13g01525 914 ProSiteProfiles BRX domain profile. 830 885 IPR013591 -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 96 IPR000408 -
Bda13g01525 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 496 IPR013083 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 99 115 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 149 165 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 308 326 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 206 220 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 80 93 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 190 206 IPR000408 -
Bda13g01525 914 PRINTS Chromosome condensation regulator RCC1 signature 366 387 IPR000408 -
Bda13g01525 914 MobiDBLite consensus disorder prediction 889 914 - -
Bda13g01525 914 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 892 - -
Bda13g01525 914 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 242 252 IPR000408 -
Bda13g01525 914 Pfam Transcription factor BRX N-terminal domain 671 704 IPR027988 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 372 419 IPR000408 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 266 313 IPR000408 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 149 200 IPR000408 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 318 367 IPR000408 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 204 252 IPR000408 -
Bda13g01525 914 Pfam Regulator of chromosome condensation (RCC1) repeat 97 145 IPR000408 -
Bda13g01525 914 Coils Coil 620 668 - -
Bda13g01525 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 97 148 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01525 - - - qsu:111994555 1296.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00698 Bda13g01525 CCT
Bda03g00034 Bda13g01525 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00034 Bda-Chr3:486484 Bda13g01525 Bda-Chr13:38305052 0 dispersed
Bda07g00177 Bda-Chr7:2167573 Bda13g01525 Bda-Chr13:38305052 0 dispersed
Bda07g00759 Bda-Chr7:9020952 Bda13g01525 Bda-Chr13:38305052 0 dispersed
Bda11g01223 Bda-Chr11:12603990 Bda13g01525 Bda-Chr13:38305052 0 dispersed
Bda01g01432 Bda-Chr1:50261026 Bda13g01525 Bda-Chr13:38305052 0 wgd
Bda01g01391 Bda-Chr1:49799812 Bda13g01525 Bda-Chr13:38305052 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83