Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01526 ATGGAAACCCGACTCGCTGCCTCTCTCGGCCTTTCATCTCGTAATCCAGATCACTCCCTTCCCGTTGCTGGTTTCACCTCCATTTTCACGCATTTCAACACCTTCTTAGCTTCTCCAAATTATAGTCTCGTTGCTGCTGGTTCGAAGAGGATCAACAATGGAGATAAATTCATCGCCCGCCTCTCTTTCGGTTCTGTATCGTTATCATCTGAAGCTCAGATTTCAACATCCGAATCCTCTAACAGGATCAAACCCTCCTCTAGAAAAAGCCCAAAAGTCCTGTGCTTATCAGTCTTGGAACGCGCCTTTATCGGCGCCGTTGGCGGTGGAGTTGCCGGTGCTTTCACCCATGTCTGTTTGCACCCTCTCGATACCGTAAAGACGAAGCTTCAGACAAAGGGGGCGGCTGAAATTTATAAGAACACATTCGACGCCATCGCCAAAACCTTCAAATCCAAAGGCATATTCGGATTTTACAGCGGCATCTCTGCAGTAATCGTTGGCTCTACTGCCTCGTCGGCTGTTTATTTCGGGACATGCGAGTTCGGGCAATCAATTTTATCGCATTTCGACAACTACCCATCGTTTCTAATCCCTCCGACAGCCGGGGCGATGGGAAACATCTTCTCGTCGGCGATTGTGGTGCCGAAAGAGTTGATCACGCAGCGAATGCAAGCGGCCGCTAAAGGCAAGTCATGGGAAGTTTTGTTAAAGATTCTGCAGAAAGACGGCGTTCTGGGTTTATACGCGGGATATTCTGCGACATTGCTGAGGAATTTACCTGCCGGAGTATTGAACTACTCGTCGTTCGAATACCTAAAAGCTGCCGTTTTGAGCAGGACGAAGCAGAACCAGTTAGACCCCTTCCAGAGCGTCTGCTGCGGCGCACTGGCCGGCGCGATAGCTGCTTCTCTCACGACTCCTCTTGATGTTGTCAAGACTCGGTTAATGACTCAGGTTCATGGGGAGGCCATGAATAAGCTATCTGGGGCGATGTACAGTGGGGTTTCGGCTACTCTCCGGCGAATACTGAAGGAAGAAGGGTTGGCAGGTTTTAGCCATGGAATGGGTCCTCGAGTTCTTCATGGCTCCTGTTTCTCTGCGTTGGGTTTTCTCGCGTTCGAAACTGCCAGACTTACAATTCTGCACCATTATCGCAAGCGGAAGGAATTAGCTCTCGCCTGA 1185 50.04 METRLAASLGLSSRNPDHSLPVAGFTSIFTHFNTFLASPNYSLVAAGSKRINNGDKFIARLSFGSVSLSSEAQISTSESSNRIKPSSRKSPKVLCLSVLERAFIGAVGGGVAGAFTHVCLHPLDTVKTKLQTKGAAEIYKNTFDAIAKTFKSKGIFGFYSGISAVIVGSTASSAVYFGTCEFGQSILSHFDNYPSFLIPPTAGAMGNIFSSAIVVPKELITQRMQAAAKGKSWEVLLKILQKDGVLGLYAGYSATLLRNLPAGVLNYSSFEYLKAAVLSRTKQNQLDPFQSVCCGALAGAIAASLTTPLDVVKTRLMTQVHGEAMNKLSGAMYSGVSATLRRILKEEGLAGFSHGMGPRVLHGSCFSALGFLAFETARLTILHHYRKRKELALA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38311150 38312334 + Bda000374.1 Bda13g01526 19657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01526 394 Gene3D Mitochondrial carrier domain 231 393 IPR023395 -
Bda13g01526 394 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 20 386 - -
Bda13g01526 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 380 IPR018108 -
Bda13g01526 394 Pfam Mitochondrial carrier protein 201 277 IPR018108 -
Bda13g01526 394 Pfam Mitochondrial carrier protein 285 381 IPR018108 -
Bda13g01526 394 Pfam Mitochondrial carrier protein 106 187 IPR018108 -
Bda13g01526 394 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 20 386 - -
Bda13g01526 394 SUPERFAMILY Mitochondrial carrier 103 375 IPR023395 -
Bda13g01526 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 186 IPR018108 -
Bda13g01526 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 276 IPR018108 -
Bda13g01526 394 Gene3D Mitochondrial carrier domain 53 230 IPR023395 -
Bda13g01526 394 PRINTS Mitochondrial carrier protein signature 118 132 IPR002067 GO:0055085
Bda13g01526 394 PRINTS Mitochondrial carrier protein signature 295 317 IPR002067 GO:0055085
Bda13g01526 394 PRINTS Mitochondrial carrier protein signature 105 118 IPR002067 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01526 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - zju:107421682 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00204 Bda-Chr12:2014370 Bda13g01526 Bda-Chr13:38311150 1.27E-06 dispersed
Bda13g01526 Bda-Chr13:38311150 Bda14g00339 Bda-Chr14:2433646 8.64E-08 dispersed
Bda06g00525 Bda-Chr6:7495859 Bda13g01526 Bda-Chr13:38311150 2.06E-36 transposed
Bda01g01433 Bda-Chr1:50270404 Bda13g01526 Bda-Chr13:38311150 0 wgd
Bda01g01390 Bda-Chr1:49781569 Bda13g01526 Bda-Chr13:38311150 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39