Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01527 ATGCAAGCTCAGATTCGTCCTCCTGTTATTATCTACACAGTTTCTCCCAAGATCATCCACACCAACCCTAGCGACTTCATGAACTTGGTCCAGCGTCTTACAGGCTTGGAATCTTCTTCCTCCTCTTCTTCTTCTTCTTTGACTTTTGGAGCTTCTTTATCCAGAGCTGTTCCCATGGCTGACATTCATCGCAGTGGTGCAATTTCACCGGCGGCTCGTTATGCTACGATAGAGAGAGCGGCGAGGGCAAACCCCGATGGGAAACAGAATAATCAAACGATCAGTAGCCGTGTTGAGAGAGAAGTAAGTTTCGTTGATGACATGGAAATGGGGAATGGAGCCGAGAGGACCTGGAATTTCCCCGGAATCTTGTCGCCGGGACCCTCTTCTTTATCTCCGATTCCGACCAGCTTTTTTTCTCCGATCACAGCCGATCCAAGCTCCCTAAATTTCTTTCATGATTTGAGTCCCAACCTCCCTGGGAGTAGAAGCTTCATCGAAGTTAACCCTTTCTTGACGAGTCCTTCAACCTTCGTTTCGCCAACTCAGCCATCCATAGACCTGTTCAACAATTTCTCTGATCTCTAA 588 47.62 MQAQIRPPVIIYTVSPKIIHTNPSDFMNLVQRLTGLESSSSSSSSSLTFGASLSRAVPMADIHRSGAISPAARYATIERAARANPDGKQNNQTISSRVEREVSFVDDMEMGNGAERTWNFPGILSPGPSSLSPIPTSFFSPITADPSSLNFFHDLSPNLPGSRSFIEVNPFLTSPSTFVSPTQPSIDLFNNFSDL 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38328754 38329341 - Bda000376.1 Bda13g01527 19658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01527 195 PANTHER F16F4.1 PROTEIN 2 194 - -
Bda13g01527 195 PANTHER F16F4.1 PROTEIN-RELATED 2 194 IPR039607 -
Bda13g01527 195 Pfam VQ motif 13 38 IPR008889 -
Bda13g01527 195 MobiDBLite consensus disorder prediction 85 99 - -
Bda13g01527 195 MobiDBLite consensus disorder prediction 80 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01527 K20725 MKS1; MAP kinase substrate 1 - pop:7469208 172.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01116 Bda-Chr5:59428073 Bda13g01527 Bda-Chr13:38328754 7.65E-06 dispersed
Bda13g01527 Bda-Chr13:38328754 Bda14g01057 Bda-Chr14:9059956 7.90E-24 dispersed
Bda01g01435 Bda-Chr1:50275253 Bda13g01527 Bda-Chr13:38328754 4.67E-88 wgd
Bda01g01388 Bda-Chr1:49772578 Bda13g01527 Bda-Chr13:38328754 4.67E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00219 Blo18g00219 . Bda13g01527 Bpe02g01602 Bpe14g00334 Bma01g00868 Bma02g00277 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006596 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 0 2 1 0 38