Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01537 GCGGCGGTGGCATGGGAAGCCGGGAAGCCATTGGTTATCGAGGAAGTGGAGGTGGCGCCGCCGCAGGCAAACGAAGTTCGGGTGAAGATCCTCTACACTTCCCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAGGGACAAAACCCTTTGTTTCCAAGAATTCTGGGTCATGAAGCAGGCGGGGTCGTTGAAAGCGTCGGAGAAGGAGTCACCGACTTGAAACCCGGCGACCACGTTCTTCCCGTGTTCACCGGAGAATGCACTGAATGTGCTCACTGTAAGTCCCCAGAGAGCAACATGTGTGATCTGCTAAGGATAAACACAGACAGAGGAGTGATGATTAGCGATGAAAAATCAAGATTCTCCATTAATGGCCGACCAATTTACCACTTCGTCGGCACTTCCACTTTCAGCGAGTACACTGTCGTCCACGTCGGATGCCTCGCCAAGATCAACCCACTTGCCCCATTAGACAAAGTCTGTGTTCTTAGCTGTGGAATATCCACCGGCTTTGGCGCCACCGTCAATGTCGCCAAACCAACGAAAGGTTCGACCGTAGCCGTCTTTGGTCTCGGAGCTGTAGGCCTCGCGGCTGCCGAAGGGGCAAGAGTTTCCGGGGCTTCGAGGATTATCGGAGTTGATTTGAATTCTAGCCGATTTGAAGAAGGTTTATCGACAGCTAAGAAGTTCGGAGTGACCGAGTTTGTTAACCCAAAAGACCACGAAAAACCAGTTCAAGAGGTGATCGTCGAGATGACGAATGGAGGTGTGGATCGAAGCATCGAGTGTACGGGCAATATTGATGCCATGATCTCGGCATTTGAATGTGTTCACGATGGATGGGGCGTTGCCGTTCTCGTAGGAGTGCCGCATAAAGACGCGGTTTTCAAAACACACCCGATGAACCTACTGAATGAGAGGACATTGAAGGGCACTTTCTTTGGCAACTACAAGCCTCGGTCCGATCTTCCATCTGTCGTCGAGAAGTACATGAATAAGGAGCTTGAGTTGGAGAAGTTCATAACACATCAAGTCCCATTTGGAGAGATCAACAAAGCCTTTGAGTATATGCTCAAAGGGGAGGGTCTGAGGTGCATCATCCAAATGGAAAATTAA 1119 50.4 AAVAWEAGKPLVIEEVEVAPPQANEVRVKILYTSLCHTDVYFWEAKGQNPLFPRILGHEAGGVVESVGEGVTDLKPGDHVLPVFTGECTECAHCKSPESNMCDLLRINTDRGVMISDEKSRFSINGRPIYHFVGTSTFSEYTVVHVGCLAKINPLAPLDKVCVLSCGISTGFGATVNVAKPTKGSTVAVFGLGAVGLAAAEGARVSGASRIIGVDLNSSRFEEGLSTAKKFGVTEFVNPKDHEKPVQEVIVEMTNGGVDRSIECTGNIDAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHQVPFGEINKAFEYMLKGEGLRCIIQMEN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38607656 38609463 + Bda000391.1 Bda13g01537 19668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01537 372 Pfam Zinc-binding dehydrogenase 194 325 IPR013149 -
Bda13g01537 372 SUPERFAMILY GroES-like 320 369 IPR011032 -
Bda13g01537 372 SUPERFAMILY GroES-like 1 173 IPR011032 -
Bda13g01537 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 57 71 IPR002328 GO:0008270|GO:0016491
Bda13g01537 372 PANTHER ALCOHOL DEHYDROGENASE 1 370 - -
Bda13g01537 372 CDD alcohol_DH_plants 1 369 - -
Bda13g01537 372 Gene3D - 7 362 - -
Bda13g01537 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 334 IPR036291 -
Bda13g01537 372 Pfam Alcohol dehydrogenase GroES-like domain 24 149 IPR013154 -
Bda13g01537 372 Gene3D - 171 313 - -
Bda13g01537 372 PANTHER ALCOHOL DEHYDROGENASE 2 1 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01537 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - cit:102616862 667.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g01180 Bda13g01537 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00874 Bda-Chr13:10327827 Bda13g01537 Bda-Chr13:38607656 1.60E-126 dispersed
Bda01g00693 Bda-Chr1:34098353 Bda13g01537 Bda-Chr13:38607656 2.44E-178 transposed
Bda06g00833 Bda-Chr6:11574984 Bda13g01537 Bda-Chr13:38607656 2.53E-136 transposed
Bda09g00635 Bda-Chr9:9302882 Bda13g01537 Bda-Chr13:38607656 7.42E-113 transposed
Bda01g01384 Bda-Chr1:49738048 Bda13g01537 Bda-Chr13:38607656 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89