Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01542 ATAATGGTTCAGGTAGTGCCTGTGCACGTTAGCTCCAAAGCGGAACTCAAGCGAAAGGAGAAGCTGAAGAAGAAAGCCAAGTCTGGTGGATTTGAGTCCTTAGGGTTGAGTCCGGATGTCTTCAGAGGAATCAAACGCAAGGGCTACAGAGTTCCTACTCCGATACAAAGGAAGACCATGCCTATCATACTGTCCGGTGCAGACGTCGTGGCCATGGCTCGAACTGGCTCTGGTAAGACTGCCGCATTTCTAATCCCCATGTTGGAGCGCTTGAAGCAGCATGTGCCGCAGAGTGGTGTTAGAGCCCTCATTTTATCTCCCACCAGAGATTTGGCTATTCAAACCCTCAAGTTTGCTACTGAACTTGGCCGATTTACTGATCTTCGAATAAGTTTGCTGGTTGGTGGGGACAGCATGGAAAGTCAGTTTGAAGAATTATCTCAGAATCCGGATATCATTATTGCTACTCCAGGCAGGCTTATGCATCATTTGTCTGAAGTTGATGATATGTCATTACGAACAGTGGAATATGTGGTTTTTGATGAAGCAGATTGTCTTTTTGGTATGGGTTTTGCTGAGCAGTTGCATCAAATCCTCTCACAGTTGAGTGAGAATCGCCAGACATTACTCTTTAGTGCAACCCTACCAAGTGCTCTTGCTGAGTTTGCCAAGGCAGGTTTGCGAGACCCTAAGCTCGTGCGGCTTGATTTGGAAAACAAGATCAGCCCTGACTTGAAGCTTACTTTTTTTACCTTAAGGCATGAAGAAAAACATGCTGCATTGCTATATTTGGTAAGGGAGCATATAGGTATTGATCAGCAGACATTAATTTTTGTATCTACAAAACATCATGTGGAGTTTCTCAATATGTTATTCAGAGAGGAGGGTATTGAACCTTCTGTCTGTTATGGTGACATGGACCAAGATGCTCGCAAGATTCATGTATCAAAGTTTAGGGCTAGAAAAACTATGCTGTTAATCGTGACAGATGTTGCAGCTAGGGGTATTGACATTCCATTGCTTGATAATGTGATCAATTGGGACTTTCCTCCGAAGCCTAAAATCTTTGTTCATCGAGTTGGACGAGCTGCAAGGTGTGGTCGTACTGGTACTGCCTTTTCTTTTGTGACATCTGAAGATCTGCCTTACCTTTTAGATCTTCATCTTTTTCTCTCAAAACCGATTCGGCCTGCCCCCACTGGGGAAGAGGTTTTGCATGATGTGGATGGAGTGATGTCAAAAATTAATCAAGCCACAGCTAATGGAGCAACTGTTTATGGGCGTTTTCCACAGGAGGTTATCGATCTCGCTGCTGATAGAATACGGGAAATTATTGATTCATCTGCAGAATTGAGTTTATTACAGAGAACATGTGTAAATGCATTTCGCTTATATTCAAAGACAAAACCCTTGCCTTCAAAAGAGTCCATCAGAAGATCCAAAGACTTGGTACGCGAAGGGCTTCATCCAATCTTTAAAAATGTAATGGAAGGTGGGCAATTAAGGGCATTGGCTTTTTCTGAGCGATTGAAAACGTTTAGGATGAGTAATAGACGTATTATTTATGCTAGACCCAAGCAGACAATTTTGGAAGCTGAAGGTGATGCTGCTAAATCAAAGCATCGGCAGGGCCCTTCCAGTCAATGGGTTGATGTGATGAAAAGAAAGAGAGCTATTCATGAGGAAGTCATTAACTTGGTACAGAAACAACGGTGTAGCAGTCACGCCGAAAAGGAAGTCCTACCTGAAACCCCTTCATTGCCAGCTAAGAAAGAAAAAGATAGTCGTGGGTTGAAAAGAAAGTCACTGATTTTTAAAGACGAGGAGTTCTATATAAGTTCAGTGCCTACAAATCATCATACGGAAGCAGGACTCTCAGTACGAGGTGATCAAGGTTTTGGATCAAACAGGTTAGAAAATGCTGTTCTAGATTTAGTTGGAGATGATAGTACCAGCATGCAGAAACAGAAATCTGTATATCATTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAATAACGGTGAGCGTGTAACAGCTAGTGGAAAGATAAAGACAGAGGGTGGAGCAAAAGTTAAAGCTAACAAAACAGGAATATACAAGAAATGGAAAGAGCGCTCACACACCAAAATATCTCTCAAAGGAACTGATAGTGAAGGACATGCCGATAAATCCACTAGCTTTGCAGGAAAACAGCATTTTTCGAGAGGAAATAGAAACTTGAGAACCGGCCAGAGACAAGAGTCAGTGCCAAATGCTCATGTGCGTTCAGAAGTTAAAGGTCTAGAACAAATTCGGAAGGAAAGGCAGAAGAAGGCAAATAAAAAATCTCATATGAAGAATTCCTCAAAGGGAGGGAGAAAAGGCAGAGGTGGCGGAAAAGGAATGAGGGGAAGAGCCAAAAAATCGAAGAATTGA 2418 42.43 IMVQVVPVHVSSKAELKRKEKLKKKAKSGGFESLGLSPDVFRGIKRKGYRVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLERLKQHVPQSGVRALILSPTRDLAIQTLKFATELGRFTDLRISLLVGGDSMESQFEELSQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLSENRQTLLFSATLPSALAEFAKAGLRDPKLVRLDLENKISPDLKLTFFTLRHEEKHAALLYLVREHIGIDQQTLIFVSTKHHVEFLNMLFREEGIEPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARCGRTGTAFSFVTSEDLPYLLDLHLFLSKPIRPAPTGEEVLHDVDGVMSKINQATANGATVYGRFPQEVIDLAADRIREIIDSSAELSLLQRTCVNAFRLYSKTKPLPSKESIRRSKDLVREGLHPIFKNVMEGGQLRALAFSERLKTFRMSNRRIIYARPKQTILEAEGDAAKSKHRQGPSSQWVDVMKRKRAIHEEVINLVQKQRCSSHAEKEVLPETPSLPAKKEKDSRGLKRKSLIFKDEEFYISSVPTNHHTEAGLSVRGDQGFGSNRLENAVLDLVGDDSTSMQKQKSVYHWDKRGKKYIKLNNGERVTASGKIKTEGGAKVKANKTGIYKKWKERSHTKISLKGTDSEGHADKSTSFAGKQHFSRGNRNLRTGQRQESVPNAHVRSEVKGLEQIRKERQKKANKKSHMKNSSKGGRKGRGGGKGMRGRAKKSKN 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38653409 38659130 + Bda000398.1 Bda13g01542 19673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01542 805 SMART DBP10CT_2 644 706 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bda13g01542 805 Pfam DBP10CT (NUC160) domain 644 705 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bda13g01542 805 SMART ultradead3 48 250 IPR014001 -
Bda13g01542 805 Gene3D - 6 234 IPR027417 -
Bda13g01542 805 SMART helicmild6 286 367 IPR001650 -
Bda13g01542 805 MobiDBLite consensus disorder prediction 727 752 - -
Bda13g01542 805 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 7 799 - -
Bda13g01542 805 MobiDBLite consensus disorder prediction 711 805 - -
Bda13g01542 805 CDD SF2_C_DEAD 249 376 - -
Bda13g01542 805 Gene3D - 235 400 IPR027417 -
Bda13g01542 805 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 799 - -
Bda13g01542 805 Pfam Helicase conserved C-terminal domain 257 367 IPR001650 -
Bda13g01542 805 MobiDBLite consensus disorder prediction 771 805 - -
Bda13g01542 805 CDD DEADc_DDX54 29 234 - -
Bda13g01542 805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 263 406 IPR001650 -
Bda13g01542 805 MobiDBLite consensus disorder prediction 711 726 - -
Bda13g01542 805 Pfam DEAD/DEAH box helicase 53 220 IPR011545 GO:0003676|GO:0005524
Bda13g01542 805 Coils Coil 762 782 - -
Bda13g01542 805 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 233 IPR014001 -
Bda13g01542 805 MobiDBLite consensus disorder prediction 574 595 - -
Bda13g01542 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 385 IPR027417 -
Bda13g01542 805 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 29 57 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01542 K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] - pvy:116117241 1221.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01542 Bda-Chr13:38653409 Bda13g00235 Bda-Chr13:2908759 1.46E-64 dispersed
Bda13g01542 Bda-Chr13:38653409 Bda13g00716 Bda-Chr13:8551295 1.47E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33