Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01543 ATGGAGCTTCTCTTGCAAATTGTATCTCTCATCGATGATCAGACGGTTCTCGTGGCATCAGGCGTTTGCCGAGAATGGAGGGATGTCCTGTGCTCCGACCTAACTCGTCTTTCTCTCTCATGGTGTAACAAAAATATGAACAGCTTGGTCCTATCTTTGGCTCCTAAATTCACCAAACTGCAAATTCTCGTTCTCCGCCAGGACAAACCACAGCTCGAAGACAATGCCATCGAAACGATCGCACATTTCTGCCATGACCTTCAGGTCTTGGACCTTAGCAAAAGCTTCAGGCTGAGTGACCGTTCTCTATACGCCTTGGCCCATGGCTGTCAAAATCTCACAAAACTCAATATTAGTGGATGTTCATCATTCAACGACAATGCACTGGCTTATCTCGCTCGGTTCTGCAGAAAACTAAAAGTTTTAAATCTATGTGGTTGTGCTAGAGCTGCATCTGACGTTGCATTGCAGGCTATTGGATGTTATTGCAATCAATTACAGTCCTTAAATCTCGGATGGTGTGAAAATGTTAGCGATGTTGGGGTCACAAGTTTGGCATTTGGCTGCCCTGATCTCAGAATCCTTGACTTGTGCGGCTGCCTTGGATATGCTTTTGATGCAGATGAAAGTGTGATTGCTTTAGCCAATGGATGTCCAAATCTGAGGTCTCTTGGGCTATACTATTGTCAAAACATCACAGACAGAGCAATGTATTCGTTGGCACACAGCCGAGCGAAGAGCAAACGGGCCCCTCGGGGATCTACGAAAGGCAAAACCGAAGATGGCGGGCTTAGAACTCTCAACATTAGCCAATGCACGGCTCTCACCCCCTCGGCTGTTCAGGCCCTCTGCGATTCGTTTCCTGCTCTTCACACTTGCTCCGGTAGGCATTCACTCATAATGAGTGGCTGTTTAAACTTGACGTCTGTCCATTGCGCATGCGCCGTCCAGGCTCATCGTAATTCTAGCATTTACCGCCGTCTTGCTCATTGA 993 47.33 MELLLQIVSLIDDQTVLVASGVCREWRDVLCSDLTRLSLSWCNKNMNSLVLSLAPKFTKLQILVLRQDKPQLEDNAIETIAHFCHDLQVLDLSKSFRLSDRSLYALAHGCQNLTKLNISGCSSFNDNALAYLARFCRKLKVLNLCGCARAASDVALQAIGCYCNQLQSLNLGWCENVSDVGVTSLAFGCPDLRILDLCGCLGYAFDADESVIALANGCPNLRSLGLYYCQNITDRAMYSLAHSRAKSKRAPRGSTKGKTEDGGLRTLNISQCTALTPSAVQALCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRNSSIYRRLAH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38662186 38663642 - Bda000399.2 Bda13g01543 19674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01543 330 PANTHER UNCHARACTERIZED 2 312 - -
Bda13g01543 330 SUPERFAMILY F-box domain 2 35 IPR036047 GO:0005515
Bda13g01543 330 SUPERFAMILY RNI-like 28 241 - -
Bda13g01543 330 Gene3D Ribonuclease Inhibitor 5 250 IPR032675 -
Bda13g01543 330 Pfam Leucine Rich repeat 163 186 IPR001611 GO:0005515
Bda13g01543 330 Pfam Leucine Rich repeat 110 132 IPR001611 GO:0005515
Bda13g01543 330 PANTHER F-BOX SKP2A-LIKE PROTEIN 2 312 - -
Bda13g01543 330 SMART LRR_CC_2 136 162 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 189 217 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 57 83 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 84 109 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 163 188 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 110 135 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 218 243 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 261 286 IPR006553 -
Bda13g01543 330 SMART LRR_CC_2 31 56 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01543 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - mnt:21404709 528.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00025 Bda13g01543 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01543 Bda-Chr13:38662186 Bda15g00073 Bda-Chr15:2589308 4.15E-22 dispersed
Bda03g00025 Bda-Chr3:445212 Bda13g01543 Bda-Chr13:38662186 3.89E-171 transposed
Bda01g01382 Bda-Chr1:49709803 Bda13g01543 Bda-Chr13:38662186 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43