Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01544 ATGGCACGAGTCTGTTGGCCGTATTTTGATCCTGAATACGAGAACATGAGCACTCGGATCAATCCTCCAAGAGTTTCAGTAGACAACACTAGTTGCAGCGATTGCACTCTTGTGAAGGTTGACAGCATGAACAAACCAGGAATTCTTCTGGAAGTGGTCCAGTTTCTTTCTGACCTTGACCTCATTATTATCAAAGCTTACATCTCCTCCGATGGCGGATGGTTCATGGACGTTTTTCATGTGACTGATCAGCAAGGAAAGAAGATCATCGATGGAAAAACCATTGACTACATAGAGAAGGCTTTAGGAACAAAAGGTCATACCAAAGATGGGGGAAAGACTTGGCCAGGGAAGAGGGTTGGAGTCCATTCGATTGGCGATCACACTGCGATCGAACTAACCGGTAGAGATCGCCCAGGTCTCTTATCAGAAATATCAGCCATCCTTACCAACCTCCATTTCAATGTAGTTGCCGCGGAAGTTTGGACACATAATAGGCGTATAGCATGCGTACTTTATGTTAACGATGATGCCACATGTAGGGCCGTCAACGATCCGATCAGATTATCGATAATGGAGGAGCAGCTGAAAAATGTCCTCCGTGTCTGTGAGGACAACGAGAATGTGGCCCACACCAGCTTCTCCGTGGGGCTAACTCACGTTGATCGACGGCTCCATCAGATGTTATTTGCAGATCGGGATTATGAAGGTGGTTTAGTGAGTGAGATGGATTATCCTCCTTCGATTAGACCGAAGATAACGATTGAGCACTGCAAAGAAAAAGGATATTCGGTTGTTAGTGTTCGATGCAAAGACAGAGCAAAATTGTTGTTCGACATTGTCTGCACCTTGACGGATATGCAATATGTAGTTTTTCATGCTTCGATCTCATCGGATGGTCCCAACGCTTCACAGGAGTACTATATTCGCCACATGGATGGTTGCACCCTCGATACTCAAGGAGAGAAAGAAAGGGTCGTCAAATGTCTCGAAGCCGCAATTCGAAGAAGAGTTAGTGAGGGGGTCAGCTTGGAGCTATGTGCCAAGGATCGAGTAGGTTTGCTATCACAAGTAACAAGAATACTAAGAGAGAACGGATTAACCGTCACGAGAGCCGGCGTCTCCACGGTGGGGGAGCAGGCGATGAACGTATTCTACGTCCGGGACGCATCCGGTAATCCAGTGGACATGAAAACAGTGGAAGCGCTTCGCAAGGAAATAGGACACACAATGATGTTGAATGTGAAAAAAGTTCCTCAAAATACCAAGCCTGTAGGGGCTAATTCCAATAATGGATGGGCCAAAACCAGTTTCTTCTTTGGAAACTTGCTGGAAAGGTTTTTGGCTTGA 1350 46.07 MARVCWPYFDPEYENMSTRINPPRVSVDNTSCSDCTLVKVDSMNKPGILLEVVQFLSDLDLIIIKAYISSDGGWFMDVFHVTDQQGKKIIDGKTIDYIEKALGTKGHTKDGGKTWPGKRVGVHSIGDHTAIELTGRDRPGLLSEISAILTNLHFNVVAAEVWTHNRRIACVLYVNDDATCRAVNDPIRLSIMEEQLKNVLRVCEDNENVAHTSFSVGLTHVDRRLHQMLFADRDYEGGLVSEMDYPPSIRPKITIEHCKEKGYSVVSVRCKDRAKLLFDIVCTLTDMQYVVFHASISSDGPNASQEYYIRHMDGCTLDTQGEKERVVKCLEAAIRRRVSEGVSLELCAKDRVGLLSQVTRILRENGLTVTRAGVSTVGEQAMNVFYVRDASGNPVDMKTVEALRKEIGHTMMLNVKKVPQNTKPVGANSNNGWAKTSFFFGNLLERFLA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38665106 38669280 - Bda000400.1 Bda13g01544 19675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01544 449 Gene3D - 128 211 - -
Bda13g01544 449 CDD ACT_ACR_4 341 412 - -
Bda13g01544 449 SUPERFAMILY ACT-like 32 106 IPR045865 -
Bda13g01544 449 ProSiteProfiles ACT domain profile. 343 420 IPR002912 -
Bda13g01544 449 CDD ACT_ACR_2 129 201 - -
Bda13g01544 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 448 IPR040217 -
Bda13g01544 449 SUPERFAMILY ACT-like 125 202 IPR045865 -
Bda13g01544 449 ProSiteProfiles ACT domain profile. 37 116 IPR002912 -
Bda13g01544 449 SUPERFAMILY ACT-like 339 408 IPR045865 -
Bda13g01544 449 CDD ACT_ACR_1 35 106 - -
Bda13g01544 449 Gene3D - 338 420 - -
Bda13g01544 449 CDD ACT_ACR_3 263 337 - -
Bda13g01544 449 ProSiteProfiles ACT domain profile. 130 211 IPR002912 -
Bda13g01544 449 Pfam ACT domain 343 403 IPR002912 -
Bda13g01544 449 Pfam ACT domain 37 85 IPR002912 -
Bda13g01544 449 Pfam ACT domain 130 200 IPR002912 -
Bda13g01544 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR3 4 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01544 - - - vvi:100250578 763.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00076 Bda-Chr3:796689 Bda13g01544 Bda-Chr13:38665106 1.33E-130 dispersed
Bda10g01105 Bda-Chr10:45064680 Bda13g01544 Bda-Chr13:38665106 2.45E-159 dispersed
Bda13g01544 Bda-Chr13:38665106 Bda13g01552 Bda-Chr13:38733503 2.87E-82 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8