Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01546 ATGACCAGAAAGAAGGTGAAGCTTTCATTCATCCATAATGATTCTGCAAGAAAAGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATAAAGAAAGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTTATTTACAGTCCGTACGAATCTCATCCTGAGGTATGGCCGTCTGTCAATGGAGTCCAACAAGTTCTTGCCAGGTTCAGGAACATGCCAGAAATGGAGCAAAGCAAGAAGATGATGAACCAGGAGAGCTTCCTCAGGCAGAGGATAACGAAAGCTGACGAACAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTAACTGGAAGATCTTTCCAAGGTCTAACAATGGTGGATTTGAGCGATCTAGGGTGGGTTGTCGACCGGCATTTGAACGACATTGCAAAGAGAGACGAGTATCTGAACAACCCAGTGGCTCAAAATGAAAACCAGACCTTGGCTGCGGCAACAATGGCGGGCGAGCAAGAAATAGCGTATAGAAATGGAGAACCAACCTTTCAAACAATGGAACCAGTGCAGAGATCATCACACCCATGGTTTATTGAGATGGCGAATTCAACTGGAGATCATTATCATCATCATCATCATAATCAAACGATGGGATTTGGAGCGGAGGATATGATCTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA 744 45.03 MTRKKVKLSFIHNDSARKATFKKRKKGLIKKVSELSTLCGIEACAVIYSPYESHPEVWPSVNGVQQVLARFRNMPEMEQSKKMMNQESFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLSDLGWVVDRHLNDIAKRDEYLNNPVAQNENQTLAAATMAGEQEIAYRNGEPTFQTMEPVQRSSHPWFIEMANSTGDHYHHHHHNQTMGFGAEDMILPFGDRNHSSIWSTPFSP 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38692167 38692993 - Bda000402.1 Bda13g01546 19677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01546 247 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bda13g01546 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 224 - -
Bda13g01546 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Bda13g01546 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda13g01546 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda13g01546 247 Coils Coil 87 114 - -
Bda13g01546 247 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01546 Bda-Chr13:38692167 Bda13g01554 Bda-Chr13:38743510 7.60E-165 dispersed
Bda13g01546 Bda-Chr13:38692167 Bda13g01550 Bda-Chr13:38705669 4.64E-39 proximal
Bda08g01106 Bda-Chr8:25093608 Bda13g01546 Bda-Chr13:38692167 7.77E-76 transposed
Bda10g00822 Bda-Chr10:42625821 Bda13g01546 Bda-Chr13:38692167 3.23E-78 transposed
Bda01g01380 Bda-Chr1:49664109 Bda13g01546 Bda-Chr13:38692167 1.70E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16941 PF00319 SRF-TF 1.70E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01546 - - vvi:100254549 276.174