Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01549 ATGCAACCAACACCTGCTGGTGGACGTCGTGGCAGTGGTGGTGTCGGCAGCGAGGAAGAACCGAGTGACGGGGCCGGACTCGCTCGATTTCGCTCAGCTCCGGCGACCTGGTTAGAGGCTCTTCTGGACGAAGAAGAGGAAGACTTGTTGAAGCCTAATCAGTGCTTTACCCAGCTTCTTTCCAACAACTTAGACATACCCAGTTCTCAAAAATCGGTTTCTTTCAGTTCATCGACCGATCAGGATTTATTTCAGCTCGGGTCTTCGGATGGGTTTTTGAGGCAGAACAGTTCGCCGGCCGTCTTCCTAGCCAACGGCGGAATCGGGTCCGATGGATTCTTCCCCAATACCGGAATTTCAGCTTCCAACGGCTTCCAGCCGCCGAATATGGAAGTATCTCCGACGACGTCAAAAAGAGCTAGGGAAGCCAAAATCAGAAACATTCCTCCAAAATTTTCCGCTCAGAAAGAGGAGCAAAATGATGAGGTGCTTGGTGGGGTTTCGAGCTCTATCGACATGGAGATAGACAAGCTTTTGGAGGATTCAGTACCATGCCGAGTCCGTGCAAAGCGTGGCTGCGCTACGCACCCTCGCAGCATTGCAGAGAGGGTTCGAAGAACTCGCATTAGTGACAGGATAAGGAAGCTTCAGGAGTTGGTGCCTAATATGGATCGGCAAACAAACACTGCCGATATGCTAGAGGAGGCTGTAGAGTATGTCAAATATCTTCAGGGGCAGATTCAGGAACTGTCGGAGCATCAAAGGAGATGTACTTGCATGGGCAAAGAAGAGTAA 795 50.82 MQPTPAGGRRGSGGVGSEEEPSDGAGLARFRSAPATWLEALLDEEEEDLLKPNQCFTQLLSNNLDIPSSQKSVSFSSSTDQDLFQLGSSDGFLRQNSSPAVFLANGGIGSDGFFPNTGISASNGFQPPNMEVSPTTSKRAREAKIRNIPPKFSAQKEEQNDEVLGGVSSSIDMEIDKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDRQTNTADMLEEAVEYVKYLQGQIQELSEHQRRCTCMGKEE 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38701893 38703836 + Bda000406.1 Bda13g01549 19680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01549 264 MobiDBLite consensus disorder prediction 121 140 - -
Bda13g01549 264 CDD bHLH_AtbHLH_like 198 251 IPR045239 -
Bda13g01549 264 Gene3D - 194 263 IPR036638 GO:0046983
Bda13g01549 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 243 IPR011598 GO:0046983
Bda13g01549 264 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 261 - -
Bda13g01549 264 PANTHER TRANSCRIPTION FACTOR BHLH80 19 261 - -
Bda13g01549 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 257 IPR036638 GO:0046983
Bda13g01549 264 MobiDBLite consensus disorder prediction 121 136 - -
Bda13g01549 264 Pfam Helix-loop-helix DNA-binding domain 198 244 IPR011598 GO:0046983
Bda13g01549 264 SMART finulus 199 249 IPR011598 GO:0046983
Bda13g01549 264 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01378 Bda-Chr1:49646025 Bda13g01549 Bda-Chr13:38701893 2.58E-128 dispersed
Bda13g00261 Bda-Chr13:3274217 Bda13g01549 Bda-Chr13:38701893 6.37E-35 dispersed
Bda13g01549 Bda-Chr13:38701893 Bda01g01945 Bda-Chr1:55838157 4.77E-18 dispersed
Bda13g01549 Bda-Chr13:38701893 Bda03g01606 Bda-Chr3:55356807 1.74E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16942 PF00010 HLH 4.90E-11 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01549 - - dzi:111315792 279.641