Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01554 ATGACCAGAAAGAAGGTGAAGCTTTCATTCATCTATAATGATTCTGCAAGAAAAGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATAAAGAAAGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTTATTTACAGTCCGTACGAATCTCATCCTGAGGTATGGCCGTCTGTCAATGGAGTCCAACGAGTTGTTGCCAGGTTCAGGAACATGCCAGAAATGGAGCAAAGCAAGAAGATGATGAACCAGGAGAGCTTCCTCAGGCAGAGGATAACGAAAGCTGACGAACAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTAACTGGAAGATCTTTCCAAGGTCTAACAATGGTGGATTTGGGCGATCTAGGGTGGGTTGTCGACCGGCATTTGAACGACATTGCAAAGAGAGACGAGTATCTGAACAACCCAGTGGCTCAAAATGAAAACCCGACCTTGGCTGCAGCAACAATGGTGGGCGAGGAAGAAATAGCGTATAGAAATGGAGAACCAAGCTTTCAAACAATGGAACCAGTGCAGAGATCATCACACCCATGGTTTATTGAGACGGCGAATTCAACTCCAGATCATTATCATCATCATCATCATCATCATAATCAAATGATGGGATTTGGAGCGGAGGATATGATCTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA 750 44.93 MTRKKVKLSFIYNDSARKATFKKRKKGLIKKVSELSTLCGIEACAVIYSPYESHPEVWPSVNGVQRVVARFRNMPEMEQSKKMMNQESFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLGDLGWVVDRHLNDIAKRDEYLNNPVAQNENPTLAAATMVGEEEIAYRNGEPSFQTMEPVQRSSHPWFIETANSTPDHYHHHHHHHNQMMGFGAEDMILPFGDRNHSSIWSTPFSP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38743510 38744343 - Bda000412.1 Bda13g01554 19685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01554 249 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda13g01554 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bda13g01554 249 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 230 - -
Bda13g01554 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g01554 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g01554 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g01554 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Bda13g01554 249 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bda13g01554 249 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Bda13g01554 249 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda13g01554 249 Coils Coil 87 114 - -
Bda13g01554 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01380 Bda-Chr1:49664109 Bda13g01554 Bda-Chr13:38743510 6.22E-108 dispersed
Bda10g00822 Bda-Chr10:42625821 Bda13g01554 Bda-Chr13:38743510 3.20E-79 dispersed
Bda13g01546 Bda-Chr13:38692167 Bda13g01554 Bda-Chr13:38743510 7.60E-165 dispersed
Bda13g01554 Bda-Chr13:38743510 Bda09g01181 Bda-Chr9:42771629 1.72E-15 dispersed
Bda13g01550 Bda-Chr13:38705669 Bda13g01554 Bda-Chr13:38743510 3.05E-33 proximal
Bda13g01554 Bda-Chr13:38743510 Bda13g01557 Bda-Chr13:38756949 1.38E-38 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16944 PF00319 SRF-TF 5.30E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01554 - - vvi:100254549 271.166