Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01574 ATGGCCTCGATCCTTGTTTCTTCCTCCTCTTCTGCTTTCAACCCTCCTTTCTCTTATGTTCGCCGGCTTTTCGAAGGACCGGCTTCCGATCGTCGGGGAGACGAGGATGTCAATATGGTCGATGATTGTCGGGTTTTGAAGGCTGAAGAACCGGTTTCTATGGAGAAGGGTTTGAGTTCGCATGTTAAGTTGAAGAGGAGACCGGCAAAGATTGTGGTCCCTGAATTTTGTCCGGATTTGTTTGGTGGTCAGATGAAAAAGAAGATGGATGTGAGGGAGGTGATCGAGGTCCGAGGAAGAGATTTTTGTTTGGCTAGCAAGAGAGGAAGGAGGGAGGTAATGGAAGATAGCTATGCAGCCATGGCTGACGTTTTAGGCGATCAAAAACAGGCGTTTTTCGCAGTGATCGACGGGCATGGAGGATGCAGTGCTGCTGACTACGTTGCAGAAAATCTGGGGAAAAACATAGTGAATGAACTTGCGATGGTTAATGGAGACGAAGAACTGGCAATTCGCAGAGGATATGAAGTTACAGACAATGAGTTTCTTCGTCGGGGTGTCAGCAGTGGAGCATGTGCAGCAAGTGTGTTAGTGAGAGGAGGAGAGTTGCATGTAGCAAATGTAGGCGATTGTAGAGTAGTGTTGAGTAGAAAAGGAGAGGCCCGTCGTGTCACCAACGAACACCGGCTATGCCGGGAGGACGAGCGGGTTCGGATCGAAAACTCAGGCGGTTTCGTGGATTGCCGAAATGGAGTTTGGAGAGTCCAAGGTTGTCTAGCAGTGTCTAGAGCCATTGGAGACCTTCACATGAAAGAGTTGATCATTGCAGAGCCTGAAATCATCAAGCTTCCTTTGACTCCAGATTGTCAATTCTTAATCATGGCTTCTGATGGATTATGGGACAAGGTAAATGAAGAGGAAGCTGTTGGTCTAGTGTGCAAATACTACATCGAAGAAGAAGATCGAATGAAGTGTTGTAAAGAACTAGTCGAGATGTCGTGCAGGAGAGGGAATCTCGACGACATAACCGTTATGGTGGTTGATCTCCAAAGCTTCTGTTGA 1062 47.46 MASILVSSSSSAFNPPFSYVRRLFEGPASDRRGDEDVNMVDDCRVLKAEEPVSMEKGLSSHVKLKRRPAKIVVPEFCPDLFGGQMKKKMDVREVIEVRGRDFCLASKRGRREVMEDSYAAMADVLGDQKQAFFAVIDGHGGCSAADYVAENLGKNIVNELAMVNGDEELAIRRGYEVTDNEFLRRGVSSGACAASVLVRGGELHVANVGDCRVVLSRKGEARRVTNEHRLCREDERVRIENSGGFVDCRNGVWRVQGCLAVSRAIGDLHMKELIIAEPEIIKLPLTPDCQFLIMASDGLWDKVNEEEAVGLVCKYYIEEEDRMKCCKELVEMSCRRGNLDDITVMVVDLQSFC 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39243086 39244595 + Bda000442.1 Bda13g01574 19705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01574 353 PANTHER PROTEIN PHOSPHATASE 2C 2-RELATED 54 352 - -
Bda13g01574 353 CDD PP2Cc 100 349 IPR001932 -
Bda13g01574 353 PANTHER PROTEIN PHOSPHATASE 2C 54 352 IPR015655 GO:0004722|GO:0006470
Bda13g01574 353 SUPERFAMILY PP2C-like 101 350 IPR036457 -
Bda13g01574 353 SMART PP2C_4 91 347 IPR001932 -
Bda13g01574 353 Gene3D - 93 352 IPR036457 -
Bda13g01574 353 ProSiteProfiles PPM-type phosphatase domain profile. 101 349 IPR001932 -
Bda13g01574 353 SMART PP2C_SIG_2 92 349 IPR001932 -
Bda13g01574 353 Pfam Protein phosphatase 2C 105 341 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01574 Bda-Chr13:39243086 Bda03g00114 Bda-Chr3:1021779 6.94E-55 dispersed
Bda01g02205 Bda-Chr1:57925610 Bda13g01574 Bda-Chr13:39243086 5.20E-64 transposed
Bda14g00243 Bda-Chr14:1703696 Bda13g01574 Bda-Chr13:39243086 6.40E-90 transposed
Bda01g00652 Bda-Chr1:33517281 Bda13g01574 Bda-Chr13:39243086 5.57E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01574 K17506 - rcu:8277160 388.267