Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01579 ATGCAGGTTCCCTTCTTGATTGATCTTGGAGAAAAGGCTAAGGTCCCCATTATTTCCTTTTCTGCCACAAACCCTTCCCTTACATCTCTTCCAAGTTCATACTTTTTCCAAATCGCCCAAAACGACTCGTCTCAAGTTCAACCCATTGCCGCAATCCTCAAAGCTTTCGGGTGGCAAGAACTCGTCCCCATCTACGTTGATAATGAATTTGGGCAGGGGATTATACCCTATTTGGCCGATGCGTTATACCACATGGACGCTCGTATGCCTTATAGAAGTCCTATTCCTTCATCAGCTTCTGATGATCAAATTGTATCCGAGCTGTACAAGTTGATGAATATGCAAACTAGGGTTTTTGTTCTCCATCTCTTACCTAGCCTTGCTTCAAGGATTTTGAAAAAAGCAAAAGAGATTGGAATGATGAGTGAAGGATATGTCTGGATCATGACTGGTTCAACCAGTAATCTCTTGAGTCAAATAGACAAGTCAGTTTTCAATTCGATCCAAGGCGTATTGGGTGTGAAAACTTATGTTCCGCCATCGAAGGAGGTAGATAATTTCACAGAAAGGTGGAAATGGAAGTTTCAGCAAGATAATCCTACCAGTCTCGATGTTCAATTGAATGTTTTTGGACTTTGGAGTTATGATGCTGTTTGGGCATTAGCAATGGCTATCGAGAGAGCCTTCTCGATTTCGAACCGGGGCTATCGAAAGACCAATAGCTTGACCAATCTAACGGAACTCGACACTTTTGGCTTTTCTGTTAATGGCCCAAAAATTCAGGAAGCTCTATCCAACACAACATTTTCAGGACTTAGCGGACCGTTTAGCCTCATTGACGGCCAATTGCAGTCGACAACTTCAGAAATAGTGAACATGAATGGTCAGGAATGGAGCACCATTGGATTTTGGACACCTGAAACTGGAGTCACAAAAACTTTGAGTTCATCCTCTTCGGCCGAGCCAACTCTAGGGAGAATTACATGGCCAGGAGATTCTTATTCAGCTCCAAAGGGATGGGAGATTCTAACAAATGGGAAGAAACTGCGAGTAGGAGTTCCTACCAAGGATGGTTTTAGTGAGTTTGTGAAAGTAACATATGATTCCATCTCAAATACAACTAACGTCACTGGCTACTGCATATACATCTTTAATGCTGTTCTTGAGGAATTGCCTTACGCCATTGTTCCGGAGTACATCCCCTACAACAAGACCAACTTTACGTACGATGAAATGGTCTACGAAGTCTTTCTTGGGAACTTCGACGCAGTTGTGGGAGATGTAACCATCAGAGAAAACAGATCTTTGTTCGTGGATTTTACCTTGCCATACACAGAATCAGGGGTTCTAATGGTGGTACCTATCAAAGATAACTCGAGGAAGAATGAATGGGTGTTCTTGAAGCCTCTGTCTTGGGATGTTTGGGCTACAAGTGGTTGCTTCTTCGTCTTCATCGGCTTTGTCGTATGGGTTCTTGAGCACAGAATAAATGAAGATTTCAGAGGACCTCCCGCTCATCAGATTGGCACTAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCACAGAGAGAAACAGTTGTTAGCAATTTGGCTAGATTTGTGGTGGTTATATGGTTCTTCGTCGTCCTAATTCTGACCCAGAGCTACACAGCCAGTTTAACCTCGCTTCTCACAGTTCAACAGCTACAACCTACTGTGACAGATGTGAATCAGCTTTTGAAGCGCAAGGAAAGAGTTGGATATCAAGATGGTTCGTTTGTCTTCGGAATTTTGAAATCCTTAAAATTTGACCCTGACAAACTAGTGAGCTATGGCTCTCCAGAAAAATTAGATGAACTACTCTCCAAAGGAAGCGCCAATGGAGGCATCTCAGCCGCATTCGAAGAAATTCCCTACGTGAAGCTTTTTCTTTCCAACTATTGCTCAAAATATACCACCATTGATCCTTCTTATAAAACTGGTGGATTTGGATTTGTAAGTTTCGTCTTCTTCTCACTTGTGAATCTGCCATTGCGTTGGAGCTTGATTAAATTTCCCGCGATCGTAAATTACAGGTATTTCCTTTGGGTTCCCCACTTGTGGCTGACATATCGAGGAAAATATTGA 2109 42.67 MQVPFLIDLGEKAKVPIISFSATNPSLTSLPSSYFFQIAQNDSSQVQPIAAILKAFGWQELVPIYVDNEFGQGIIPYLADALYHMDARMPYRSPIPSSASDDQIVSELYKLMNMQTRVFVLHLLPSLASRILKKAKEIGMMSEGYVWIMTGSTSNLLSQIDKSVFNSIQGVLGVKTYVPPSKEVDNFTERWKWKFQQDNPTSLDVQLNVFGLWSYDAVWALAMAIERAFSISNRGYRKTNSLTNLTELDTFGFSVNGPKIQEALSNTTFSGLSGPFSLIDGQLQSTTSEIVNMNGQEWSTIGFWTPETGVTKTLSSSSSAEPTLGRITWPGDSYSAPKGWEILTNGKKLRVGVPTKDGFSEFVKVTYDSISNTTNVTGYCIYIFNAVLEELPYAIVPEYIPYNKTNFTYDEMVYEVFLGNFDAVVGDVTIRENRSLFVDFTLPYTESGVLMVVPIKDNSRKNEWVFLKPLSWDVWATSGCFFVFIGFVVWVLEHRINEDFRGPPAHQIGTSLWFSFSTMVFAQRETVVSNLARFVVVIWFFVVLILTQSYTASLTSLLTVQQLQPTVTDVNQLLKRKERVGYQDGSFVFGILKSLKFDPDKLVSYGSPEKLDELLSKGSANGGISAAFEEIPYVKLFLSNYCSKYTTIDPSYKTGGFGFVSFVFFSLVNLPLRWSLIKFPAIVNYRYFLWVPHLWLTYRGKY 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39292530 39294797 + Bda000448.3 Bda13g01579 19710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01579 702 Pfam Receptor family ligand binding region 8 295 IPR001828 -
Bda13g01579 702 Gene3D - 464 585 - -
Bda13g01579 702 Pfam Bacterial extracellular solute-binding proteins, family 3 373 624 IPR001638 -
Bda13g01579 702 SUPERFAMILY Periplasmic binding protein-like I 8 331 IPR028082 -
Bda13g01579 702 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 659 - -
Bda13g01579 702 CDD GluR_Plant 347 654 - -
Bda13g01579 702 Gene3D - 250 347 - -
Bda13g01579 702 SMART GluR_14 348 698 IPR001320 GO:0015276|GO:0016020
Bda13g01579 702 SUPERFAMILY Periplasmic binding protein-like II 326 660 - -
Bda13g01579 702 CDD PBP1_GABAb_receptor_plant 1 314 IPR044440 -
Bda13g01579 702 PANTHER GLUTAMATE RECEPTOR 2.9 1 659 - -
Bda13g01579 702 Gene3D - 348 463 - -
Bda13g01579 702 Gene3D - 43 204 - -
Bda13g01579 702 Pfam Ligand-gated ion channel 625 645 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01357 Bda-Chr1:49303673 Bda13g01579 Bda-Chr13:39292530 0 dispersed
Bda05g00582 Bda-Chr5:53807583 Bda13g01579 Bda-Chr13:39292530 1.22E-140 dispersed
Bda06g00362 Bda-Chr6:5820368 Bda13g01579 Bda-Chr13:39292530 1.66E-125 dispersed
Bda13g00619 Bda-Chr13:7223594 Bda13g01579 Bda-Chr13:39292530 5.73E-134 dispersed
Bda13g01477 Bda-Chr13:37671634 Bda13g01579 Bda-Chr13:39292530 0 dispersed
Bda13g01578 Bda-Chr13:39270395 Bda13g01579 Bda-Chr13:39292530 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01579 K05387 - qsu:111995184 862.448