Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01581 ATGGGAGAGATACAGAAATGCTGCGTGGTGACGGGAGGGCGCGGATTCGCGGCGCGGCATTTGGTGGAAATGCTCATCAAGTACGATATGTTCACCGTTCGTGTTGCTGATTTAGGTCCCGTCATTGAACTCGAGACCAGCGAGGAGCATGGAGTCCTTGGGGAAGCTTTACGTTCAGGCCGGGCTGAATACGTCTCCATGGATCTCCGAAACAAAGCTCAAGTGTTAAAAGCTTTTGATGGAGCCGAGGTTGTATTCCACATGGCTGCTCCGAATTCATCCATCAACAATTACAAGCTCCATTACTCTGTCAATGTCGAAGGAACGAAGAATGTAATCGATGCTTGCATTGAGAAAAACGTCAAGAGACTAATCTATACGAGTTCGCCTAGTGTCGTGTTTGATGGCATTCATGGAATTATCAATGGGGATGAGTCGCTGCCCTATCCAGAGAAGCACATTGATTCCTATTCTGCTACCAAATCTGAAGGAGAGGCGTTAATCATCAAGGCAAATGGCGCTAATGGGCTTCTAACTTGTAGTATAAGGCCTAGCAGCATTTTTGGTCCTGGTGATAGATTGCTGGTTCCAACTTTAGTAGCAACTGCCAGGGCAGGAAAGTCCAAGTTTATTATTGGTGATGGCAATAACGTTAACGACTTCACTTATGTTGAAAATGTGGCACATGCCCATGTTTGTGCTGAACGGGCCCTAGCATCGAAGGGAAGTGTTGCAGAAAAAGCATCTGGACAGGCATATTTTATTACTAATATGGAGCCTATCAAGTTTTGGGAGTTTATGTCCCTTCTTCTAGAAGGTCTTGGTTATAGGAGGCCTTATATTAAGATACCTGTCTTTGTTATGATGCCGATTGCTTTTATCGTGGAGGGGATATTTAAGTTATTAGGCCCTTATGGAATGGCTGTTCCACAGTTGATACCTTCTAGAGTTAGAATTCTTTCTTGCAGTAGATCTTTCAACTGCTCAAAGGCGAAAGATCGACTTGGTTACTCACCAATAATATCACTTCAGGAAGGTATCAACAAGACCATTGAATCATTCTCAAACTTGAAAGCTGAACATCATCCTGGAAAAACAGGGCCATCAAAAGCTTCCTTGTACCTCGGCAGCGGAAGAGTTGCAGACACTTTACTCTGGAAGAACAAAAAACAAACTCTGACAGTGTTGTTAGCTTTGGTGGCAATTTACTACAACATCATTCTGCCTGGAGTTACTCTTATTACTGCACTTTCGAAGATTCTCTTGGTGGTTTTTATATTCTTATTCATTCATGGGAATTTGCCTGATAAAATATTTGGATATAGGATCGAGAAAATCCCCATGTCACATTTCCACTTATCAGAAGAGATTTCCCGAAAGGTTGCTGCATCAACGGCCTCTACATGGAACAATGCAGTTAATATTTTTAAGTCTCTTTGCATGGGAAATGACTTCATCCTCTTTGTCAAGGTACCCACTTCCTGCTTTCCATGTTTATATTCTTCCATAAATATATATATTTTAATGGCAAGGTTGATGACTGACACA 1548 42.31 MGEIQKCCVVTGGRGFAARHLVEMLIKYDMFTVRVADLGPVIELETSEEHGVLGEALRSGRAEYVSMDLRNKAQVLKAFDGAEVVFHMAAPNSSINNYKLHYSVNVEGTKNVIDACIEKNVKRLIYTSSPSVVFDGIHGIINGDESLPYPEKHIDSYSATKSEGEALIIKANGANGLLTCSIRPSSIFGPGDRLLVPTLVATARAGKSKFIIGDGNNVNDFTYVENVAHAHVCAERALASKGSVAEKASGQAYFITNMEPIKFWEFMSLLLEGLGYRRPYIKIPVFVMMPIAFIVEGIFKLLGPYGMAVPQLIPSRVRILSCSRSFNCSKAKDRLGYSPIISLQEGINKTIESFSNLKAEHHPGKTGPSKASLYLGSGRVADTLLWKNKKQTLTVLLALVAIYYNIILPGVTLITALSKILLVVFIFLFIHGNLPDKIFGYRIEKIPMSHFHLSEEISRKVAASTASTWNNAVNIFKSLCMGNDFILFVKVPTSCFPCLYSSINIYILMARLMTDT 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39320002 39324576 + Bda032815 Bda13g01581 19712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01581 516 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 5 366 - -
Bda13g01581 516 Gene3D - 2 359 - -
Bda13g01581 516 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 356 IPR036291 -
Bda13g01581 516 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 284 IPR002225 GO:0003854|GO:0006694|GO:0016616
Bda13g01581 516 Pfam Reticulon 380 492 IPR003388 -
Bda13g01581 516 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01581 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - zju:107420046 763.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00219 Bda-Chr3:1705221 Bda13g01581 Bda-Chr13:39320002 4.48E-21 dispersed
Bda03g00328 Bda-Chr3:2782881 Bda13g01581 Bda-Chr13:39320002 1.81E-48 dispersed
Bda13g00730 Bda-Chr13:8792231 Bda13g01581 Bda-Chr13:39320002 4.68E-13 dispersed
Bda13g01581 Bda-Chr13:39320002 Bda12g00810 Bda-Chr12:37323613 3.62E-12 dispersed
Bda13g01581 Bda-Chr13:39320002 Bda09g00541 Bda-Chr9:7103342 3.13E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35