Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01589 TTGCAGAATATGGACGGGGCTGTTCCGTACAATCCTCGTACGGTCGAGGAGGTGTTTACGGATTTCAAGGGTCGTAGAGCTGGCATGCTTAAAGCCCTCACTACTGATGTCGAAAGCTTCTACCATCAGTGCGATCCCGAAAAAGAAAATCTCTGTCTTTATGGATATCCTGGTGGGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGAATTAATTTTGCCAGAGATGGGATGGAAGAAAAAGATTGGTTATCCCTAGTTGCTGTTCATAGTGATATCTGGTTAAATGCTGTTGCCTTTTATTTTGGAGCTAGGTTCGGATTTGACAAAAATGATAGGAAACGCCTTTTTAATATGATCAACGAGTTTCCGACAATATTCGAGGTCGTGACAGGAACGGCCAAAAAACAAGCAAAAGATAAATCATCAGTCTCGAATCTCAGCAGTAACAAATCCAAAACTAGTGCAAAGCGTGGTTCTGAATCTCATGAAAAGCCAATGCAAATGAACGACGAGGATGAAGAGGGGTTGGAAGAGGAAGACAATGAAGAGCTTGGAGACACTCTTTGCGGTGCTTGTGGGGACAACTATGCATCAGATGAATTCTGGATTTGCTGTGACATCTGTGAGGTGTGGTTCCATGGGAAGTGTGTCAAAATCACCCCAGCAAAGGCAGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAGCGCGAACTTGA 762 44.36 LQNMDGAVPYNPRTVEEVFTDFKGRRAGMLKALTTDVESFYHQCDPEKENLCLYGYPGGQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDIWLNAVAFYFGARFGFDKNDRKRLFNMINEFPTIFEVVTGTAKKQAKDKSSVSNLSSNKSKTSAKRGSESHEKPMQMNDEDEEGLEEEDNEELGDTLCGACGDNYASDEFWICCDICEVWFHGKCVKITPAKAEHIKQYKCPSCSNKRART 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39420346 39422898 + Bda000457.1 Bda13g01589 19720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01589 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 252 - -
Bda13g01589 253 SUPERFAMILY FYVE/PHD zinc finger 191 250 IPR011011 -
Bda13g01589 253 MobiDBLite consensus disorder prediction 150 165 - -
Bda13g01589 253 Pfam Alfin 14 142 IPR021998 GO:0006355|GO:0042393
Bda13g01589 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bda13g01589 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bda13g01589 253 SMART PHD_3 199 247 IPR001965 -
Bda13g01589 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bda13g01589 253 PANTHER CPG BINDING PROTEIN 7 252 IPR045104 GO:0006355|GO:0042393
Bda13g01589 253 Pfam PHD-finger 200 249 IPR019787 -
Bda13g01589 253 MobiDBLite consensus disorder prediction 150 191 - -
Bda13g01589 253 MobiDBLite consensus disorder prediction 166 180 - -
Bda13g01589 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00180 Bda-Chr6:2481505 Bda13g01589 Bda-Chr13:39420346 1.79E-114 dispersed
Bda08g00428 Bda-Chr8:4319510 Bda13g01589 Bda-Chr13:39420346 3.12E-114 dispersed
Bda11g01029 Bda-Chr11:10012004 Bda13g01589 Bda-Chr13:39420346 1.63E-127 dispersed
Bda13g01589 Bda-Chr13:39420346 Bda15g00255 Bda-Chr15:5144962 9.84E-97 dispersed
Bda13g01589 Bda-Chr13:39420346 Bda01g01999 Bda-Chr1:56332600 7.11E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16947 PF12165 Alfin 2.50E-67 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01589 - - vvi:100247536 427.172