Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01590 ATGGATGGAGTCATTGGATCTGATTTTCCTTTCTACTCCACTCTTCGTCGCTTGATGGATTTGCCAGACGGGATCGACAAGTCATCCAACAAGCAGACTCGACGCTACGTCCGCGACGCCAAGGCCATGGCTGCTACTCCGGCTGACGTAAAGGAATATCCTGATTCCTACGTCTTCATCATCGACATGCCAGGATTGAAAACCGGGGATATCAAGGTGCAGGTGGAGGACGAGAATGTTCTTCTGATCAGTGGCGAGAGAAAGCGGGAGGAGGAGAAAGAGGATGCTAAGTTCCTCAGAATGGAGAGGAGGATCGGCAAGCTCATGAGAAAGTTTGTCCTGCCGGAAGATTCAAACACCGATGCCGTGTCAGCGGTTTGTCAGGACGGCGTGCTCAGTGTGACGGTGGAGAAACTACCTCTGCGAAAGTCGAAAAGGCCCAGAACAATACAAGTAGAGATTGCATAA 468 50.85 MDGVIGSDFPFYSTLRRLMDLPDGIDKSSNKQTRRYVRDAKAMAATPADVKEYPDSYVFIIDMPGLKTGDIKVQVEDENVLLISGERKREEEKEDAKFLRMERRIGKLMRKFVLPEDSNTDAVSAVCQDGVLSVTVEKLPLRKSKRPRTIQVEIA 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39486566 39487033 + Bda000460.1 Bda13g01590 19721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01590 155 SUPERFAMILY HSP20-like chaperones 11 146 IPR008978 -
Bda13g01590 155 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 154 - -
Bda13g01590 155 Gene3D - 10 154 IPR008978 -
Bda13g01590 155 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 39 153 IPR002068 -
Bda13g01590 155 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 154 - -
Bda13g01590 155 Pfam Hsp20/alpha crystallin family 49 152 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01590 K13993 HSP20; HSP20 family protein - tcc:18588112 220.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00134 Bda-Chr3:1173842 Bda13g01590 Bda-Chr13:39486566 5.20E-66 dispersed
Bda13g01590 Bda-Chr13:39486566 Bda01g02057 Bda-Chr1:56822013 9.58E-23 dispersed
Bda05g00618 Bda-Chr5:54229225 Bda13g01590 Bda-Chr13:39486566 3.28E-12 transposed
Bda01g00633 Bda-Chr1:33329547 Bda13g01590 Bda-Chr13:39486566 2.81E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g132 Blo01g01454 . . . . . . . . . Cma01g01713 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01402 . . . Blo17g00278 . . Bda13g01590 . . . . . . . . . Car01g01331 . . . . . . . . . . . . . . . . . . . . Cme07g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74