Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01592 ATGGGATCAGAAAAAGAGAAGAAAAAGGGTTCCGCTTCTTCTGCTTCGTCAACATCGCCTTGTGCTAATCTCAGAGCAGCCTACAACAGTTGCTTCAACCGATGGTATTCTGAGAAGTTTGTGAAAGGTCAATGGGAGAAACAGGACTGCGTTACTGAGTGGAAGAAATATCGAGCTTGTCTTTCTGAAAATCTGGACGATAAGCATTTGAGTCGCTTCCTGGAAGCCGAACTAACGGTGGATTCATCAAGTCACCTAGACGATGGTGATGGACTATGA 279 44.8 MGSEKEKKKGSASSASSTSPCANLRAAYNSCFNRWYSEKFVKGQWEKQDCVTEWKKYRACLSENLDDKHLSRFLEAELTVDSSSHLDDGDGL 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39489148 39489650 - Bda000462.1 Bda13g01592 19723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01592 92 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 18 68 - -
Bda13g01592 92 SUPERFAMILY Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 70 IPR036811 -
Bda13g01592 92 MobiDBLite consensus disorder prediction 1 20 - -
Bda13g01592 92 Pfam Uncharacterised protein family (UPF0203) 16 77 IPR007918 -
Bda13g01592 92 PANTHER TP53-REGULATED INHIBITOR OF APOPTOSIS 1 7 85 IPR007918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01592 K17968 TRIAP1, MDM35; TRIAP1/MDM35 family protein - zju:107435533 125.946
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g120 . . . . . . . . . Cmo12g00592 . . . . Sed08g1786 . . Bhi04g01488 Tan02g1610 Cmetu03g0847 . Hepe08g1408 . Lcy13g2198 . . . . . . . Cone4ag1680 . . . . . . . Blo17g00279 . . Bda13g01592 Bpe14g00272 . . Bma02g00537 . . . . Cma12g00653 . . . . . . . . . . . . . . . . . . . . Chy03g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012856 1 1 1 3 1 0 2 0 0 1 0 0 2 1 1 2 0 2 0 0 1 1 1 1 1 0 1 1 2 1 28