Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01595 ATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGATGCTCGTCAATACGATACTAAAATGAACGAAATACTTGGTGGGGAAGCAGAGGATTTTTTCACAACATATGATGAGGTCTGTGAAAGTTTTGATGCCATGGGTTTGCAGGAAAACCTCTTGAGGGGCATATATGCATATGGTTTTGAAAAACCTTCTGCTATCCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTGATGTAATTCAACAAGCTCAATCTGGAACTGGGAAAACAGCCACTTTCTGCTCTGGAATTTTGCAGCAGTTGAATTATGGACTAGTTGAATGCCAGTCATTAGTCCTTGCACCCACCCGAGAGCTGGCGCAACAAATTGAGAAGGTTATGCGTGCATTAGGTGACTATCTTGGTGTCAAGGTCCACGCATGTGTTGGTGGTACAAGTGTTCGTGAAGATCAGCGTATTCTTTCAAGTGGGGTTCATGTTGTTGTTGGTACACCTGGTCGTGTGTTTGACATGTTGAGGAGACAATCCCTTCGCCCTGATCATATAAAAATGTTTGTGTTAGACGAAGCAGATGAGATGCTTTCACGAGGTTTCAAGGATCAGATCTATGATATTTTCCAGTTGCTGCCGCCAAAAATTCAGGTCGGGGTTTTCTCTGCTACTATGCCACCTGAGGCACTTGAGATCACAAGGAAGTTCATGAATAAACCTGTTCGTATTCTGGTCAAACGAGATGAGCTCACCCTTGAGGGTATTAAGCAATTCCATGTCAATGTTGACAAGGAGGAATGGAAGCTTGACACTCTTTGTGACCTTTATGAAACTTTGGCAATCACACAGAGTGTCATTTTTGTTAATACCAGGCGCAAGGTTGATTGGCTGACAGGACAAGATGCGCAGTCGTGA 909 44.0 MAGLAPEGSQFDARQYDTKMNEILGGEAEDFFTTYDEVCESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLNYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTGQDAQS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39516012 39517375 + Bda000466.1 Bda13g01595 19726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01595 302 SMART ultradead3 59 256 IPR014001 -
Bda13g01595 302 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Bda13g01595 302 Gene3D - 30 248 IPR027417 -
Bda13g01595 302 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 298 - -
Bda13g01595 302 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Bda13g01595 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 243 IPR027417 -
Bda13g01595 302 CDD DEADc_EIF4A 44 242 - -
Bda13g01595 302 Gene3D - 249 298 IPR027417 -
Bda13g01595 302 PANTHER BNAA02G16100D PROTEIN 6 298 - -
Bda13g01595 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 296 IPR027417 -
Bda13g01595 302 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Bda13g01595 302 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00426 Bda-Chr5:49979059 Bda13g01595 Bda-Chr13:39516012 5.24E-122 dispersed
Bda13g01595 Bda-Chr13:39516012 Bda13g00354 Bda-Chr13:4397992 1.49E-51 dispersed
Bda13g01595 Bda-Chr13:39516012 Bda10g00864 Bda-Chr10:43138489 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01595 K03257 - qsu:111990247 562.762