Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01607 ATGGCGCTGAGAGGACCTGGCAGTAACAGGAGTTTGAACACACAGAATCCAGATATTTTGATTGTGATGATTGCAGTGGAGCAGATAATTAGAGGGTTTGAGCCGGACAAAGGAGATCTCTTAGATAGAAAAGGAATGGGCCCTCCACACCCTGCAACAGAAGTGAGTGGTTTCCTCTCTCTCTCTCTACACTCTTGTGCGGCTCTCATTTTCATTTCTATCTCAATGAATGGCGTCTCTTCTTCGCTCTCTTTAATGCTTCTCTGCAATTGCTGTCCTTTAATCCACTCCATTAGATGTTTTCCGCTTTGGATTCTGCGAGCAGATTTCTCTATCTCGTCTTTTAATGTTTCCATAGATATGGTCGGACAAAGCTCTATGATTGCTGATTCTACTTCGTTAGACCTTAATCATCAGAATGATCATGTCTTGAACATGGGTTTCAATCTTGATCGGTTAGCAGATGGGCTGCCTATTCCTGCTGTTTCATTTTCTAGTCTTCTTCCTCCTCCTAGCTGTTTTCTTCAGGAAACTCCTAGCTGTGTCTCCAATGGCGGCTCAAATGTGTCGAATTCTTCGTTTTTCGCTTCTGACTATCAAAGGTGTGATGAAGCTCTTGGTGACATGAACTTTAAGTGGGAAACCAACCATGTTCTTGCTTCTTTGCCTGTTGGAACTGGGTTTCAGCCTCATTCTTCCGGTGAAAATCTGGATTCTACTGCAGTGATTGATCATTCTCATGTTTTTCCAAATTTATGGAGCAAGTTTTCTCTAAGCCTAGCCACATCGTTACCTTCTCTCTCTAGAGAATCAAATAATCCGACGCAATTCTCGCAGATTAGCTTTTCCGACGAATCGAACCATTGCTTTGACGGAGCTTTCCCGTTTTCGCAAGTTCTAGCTACGTCAAGATATCTGTCTGTAGTTCAAGAAATTCTCTCTGAAACTGCTAGCTATTCACTTGAAAATCTGGATCAACTGGGATTTTCAACTTCCCCCAATGGAGCTATACCATATCCTTCTTGTTTTTCTTCGAAGAAGGGAGTTTCATCGTCGGATCATGATCTCGTTGCTCAATCTGAAACTCAGATTGATCCTGCATTGCAAAGGGCCTCTGATTTGAAGAAAACCCAACTTTTTACTCTTCTGCAATTGGCCGATGATCGATACAGTCAATGCTTAGACGAGATTCATACTGTTATATCGGCCTTCAATGCCGTTACCGAGTTGGATCCAGCTTTACACACCCACTTTGCTCTGCAAACGATATCTTTTGTGTATCAAAATCTAAGGGAACGAATTAGCAATTGCATTCTGGCAATGGAGGCTCATTCTTCTAGCTCTAACCAATCATGCTTGAAGGAGAAAGAAAGATCATTTGAGAAGTCATTCATCCAAAAACAATGGGCTCTTCAGCAGCTTAAAAGAAAAGAGCACCAATTATGGAGGCCTCAGAGGGGCTTGCCGGAAAAATCCGTCTCCGTTTTACGAGCATGGATGTTTCAGAATTTTCTCCATCCGTATCCTAAAGATACAGAGAAGCATTTACTTGCAGTGAAAAGTGGATTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAACCGATGATAGAGGAAATGTACGCCGAAATGAACAGAAGAAAGTCCGAGCCGAATCTAATAAGATGGAACGGAGAGAAATTGCTGAATCCAGTCGCTTACGAACCATGA 1731 42.4 MALRGPGSNRSLNTQNPDILIVMIAVEQIIRGFEPDKGDLLDRKGMGPPHPATEVSGFLSLSLHSCAALIFISISMNGVSSSLSLMLLCNCCPLIHSIRCFPLWILRADFSISSFNVSIDMVGQSSMIADSTSLDLNHQNDHVLNMGFNLDRLADGLPIPAVSFSSLLPPPSCFLQETPSCVSNGGSNVSNSSFFASDYQRCDEALGDMNFKWETNHVLASLPVGTGFQPHSSGENLDSTAVIDHSHVFPNLWSKFSLSLATSLPSLSRESNNPTQFSQISFSDESNHCFDGAFPFSQVLATSRYLSVVQEILSETASYSLENLDQLGFSTSPNGAIPYPSCFSSKKGVSSSDHDLVAQSETQIDPALQRASDLKKTQLFTLLQLADDRYSQCLDEIHTVISAFNAVTELDPALHTHFALQTISFVYQNLRERISNCILAMEAHSSSSNQSCLKEKERSFEKSFIQKQWALQQLKRKEHQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKSEPNLIRWNGEKLLNPVAYEP 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39601813 39604207 + Bda000478.1 Bda13g01607 19738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01607 576 Pfam Homeobox KN domain 499 538 IPR008422 GO:0003677|GO:0006355
Bda13g01607 576 ProSiteProfiles 'Homeobox' domain profile. 479 542 IPR001356 GO:0003677
Bda13g01607 576 Gene3D - 485 560 - -
Bda13g01607 576 CDD homeodomain 482 543 IPR001356 GO:0003677
Bda13g01607 576 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 159 557 - -
Bda13g01607 576 Pfam Associated with HOX 299 435 IPR006563 -
Bda13g01607 576 SUPERFAMILY Homeodomain-like 484 552 IPR009057 -
Bda13g01607 576 SMART prehox3 294 436 IPR006563 -
Bda13g01607 576 PANTHER HOMEOBOX PROTEIN ATH1 159 557 - -
Bda13g01607 576 SMART HOX_1 482 546 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01326 Bda13g01607 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01607 Bda-Chr13:39601813 Bda03g00660 Bda-Chr3:5622800 1.16E-49 dispersed
Bda01g01326 Bda-Chr1:48863701 Bda13g01607 Bda-Chr13:39601813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16950 PF07526 POX 1.80E-25 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01607 - - qlo:115971200 382.874