Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01608 ATGGCCGACGAAGCGCAGTACTCTTCCGGTACTGATTCCGCGCCTAACAAGCGAAAGTATGACGATCAAACCCCGCCGCCCACTACTCGTAGGGTGACTGGCTTTTCTGGACCTATTACTCCGTCTTCTACTGATTCCGCCCATGCCCCTCCTGCCGCTTATAACAACGTTCCCCCTCCTATGGATGAGATCCAGATTGCCAAGCAAAGAGCGCAGGAGATTGCCTCTCGTTTGATTATCTCAAGTTCTGGTGCTGCTGCGGGAGCTGATGCTAAGCGTCCTAGGGTTGAAAATGGGTCTGGTGGCTTTGACTCTTATGACAAGGGTTTTAGCTCTGCTCCAAATATGAAGTCCCACATTTCAAACTCGGCTCCTTCAGCAATACCTGTCTCGTATGGCTTCCCAGGGTCCAGCAAGAAGATCGAGATTCCAAATGGCAGGGTTGGTGTTATTATTGGTAAAGGCGGAGAGACTATCAAATATCTTCAACTACAGTCCGGGGCAAAAATTCAAGTTACTAGAGATATGGATGCAGATCCAAATTCTGTCACTCGATTGGTTGAACTCATGGGTACTCCTGATCAAGTTGCGAAGGCTGAGCAGCTGATTACTGACGTTCTTTCCGAGGCTGAAACAGGTGGATCTGGCACAGTATCCCGGAGGGTTACTGGACAATTTGGAGCAGAACAATTTGTTATGAAAATTCCAAACAACAAGGTTGGTTTAGTCATTGGGAAAGGTGGGGACACAATTAAAAGTATGCAAGCTAGGACTGGAGCTCGTATTCAGGTGATTCCTCTGCATTTACCTCCTGGTGATACTTCCTCAGAAAGGACATTGCAAATTGATGGTTCAAGTGAACAGATTGAGTCTGCAAAGCAACTGGTTAACGAAGTCATCAGCGAGGTATGCATTGATGACACCATCTGTTCTCGATGGTTATTTTTCTTTGTATATCTTTTGCAGAATCGTGCAAGAAACCCTGGTATGACTGGAGGCTATTCGCATCAAGGTTATCAAGCTCGCCCCCCAACAAGCTGGGGTCCACCTGGGGCTCCATCTATGCAACAGTCTGGTTATGGCTATGGGCAGCCCGGGTCCTACTCAGGTCCATCACCCCAGTATAACATGTCTCAACCTCCTTACCAAGGATATTCTCAACCGTCAACTGGTGGGTATACATCAAATTGGGATCAGTCATCTGGTGGCCCTCCAAATCAGTCTACAGCTCAGGGAAGTGGTTATGATTATTATGGTCAGCAACCACCTCCTCAGCAGCAGGCTTCTGGAGGTCCATTAGCTGCGAGTGATAGTTCTGGTTACAATTACAATCAGACACCAGGTTCTACCTACAGCCAGCATGGTTATTCACAAGATGGCTATGGTGGCTATCATGCACCTCCTCCTCAGTCTGGTTATGGTCAACCACCTTATGATCAGCAGCAAGGTTATGGATCTGCACCTAGCTATGGTAATCCACAAGAGGGTCCCACTCCTACTTATGGGTCCCAGGGGGATTCAGTGCAGTCAGTCCCTCCTGTTCAGCCCTCCGGATATGGTAATAATCAACAGCCTAATCCTACTAACCTGTCAAGTTATCCGCCTCAAACAACTACTCAACCAGGCTATGGAATGGCCCCAGCCGCGCAAGCCGGCTATGGAACTCAACCACCAGTTCAACCTGGATATGGACCTGGCTATGGAGCTCAAGCTCAGAAACCTCCTGCAAACCCCCCAGCATATGGGCAGACTGCTCAGTCCCCTAGCACTCCTGGAAGCTATGGCCAACCACCTCAGCAAGGTTATCCTCATTCTCAGCCACCTCCATCTGGCTATGCTCAACCAGAGGCTGGTTCAAGAGCCCCACCATCCACATATGGTTCTGCAGCAGCGCAGGCTGGTTATGGACCTCCAGCTTATGGTGCACAACCGGCAAGCCAGACAGGGTATGGGCAGGCGCCACCTCCGGCTTATAATAGCTCTTCTTATGGTGGCGGATACACCCATCCAGCAGCATATTCTACAGATGGTAGTGCGGCTGCACCTGCCCCTCAAACTTCTCAACAAAGTGGGGTCGCAAAAGCATCACCCAAAAGTTAG 2100 49.57 MADEAQYSSGTDSAPNKRKYDDQTPPPTTRRVTGFSGPITPSSTDSAHAPPAAYNNVPPPMDEIQIAKQRAQEIASRLIISSSGAAAGADAKRPRVENGSGGFDSYDKGFSSAPNMKSHISNSAPSAIPVSYGFPGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSVTRLVELMGTPDQVAKAEQLITDVLSEAETGGSGTVSRRVTGQFGAEQFVMKIPNNKVGLVIGKGGDTIKSMQARTGARIQVIPLHLPPGDTSSERTLQIDGSSEQIESAKQLVNEVISEVCIDDTICSRWLFFFVYLLQNRARNPGMTGGYSHQGYQARPPTSWGPPGAPSMQQSGYGYGQPGSYSGPSPQYNMSQPPYQGYSQPSTGGYTSNWDQSSGGPPNQSTAQGSGYDYYGQQPPPQQQASGGPLAASDSSGYNYNQTPGSTYSQHGYSQDGYGGYHAPPPQSGYGQPPYDQQQGYGSAPSYGNPQEGPTPTYGSQGDSVQSVPPVQPSGYGNNQQPNPTNLSSYPPQTTTQPGYGMAPAAQAGYGTQPPVQPGYGPGYGAQAQKPPANPPAYGQTAQSPSTPGSYGQPPQQGYPHSQPPPSGYAQPEAGSRAPPSTYGSAAAQAGYGPPAYGAQPASQTGYGQAPPPAYNSSSYGGGYTHPAAYSTDGSAAAPAPQTSQQSGVAKASPKS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39607183 39612912 + Bda000479.1 Bda13g01608 19739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01608 699 MobiDBLite consensus disorder prediction 351 457 - -
Bda13g01608 699 ProSiteProfiles Type-1 KH domain profile. 136 203 - -
Bda13g01608 699 SMART kh_6 227 301 IPR004087 GO:0003676
Bda13g01608 699 SMART kh_6 135 208 IPR004087 GO:0003676
Bda13g01608 699 ProSiteProfiles Type-1 KH domain profile. 228 296 - -
Bda13g01608 699 MobiDBLite consensus disorder prediction 679 699 - -
Bda13g01608 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 225 315 IPR036612 GO:0003723
Bda13g01608 699 Gene3D K Homology domain, type 1 226 342 IPR036612 GO:0003723
Bda13g01608 699 Gene3D K Homology domain, type 1 135 225 IPR036612 GO:0003723
Bda13g01608 699 MobiDBLite consensus disorder prediction 475 544 - -
Bda13g01608 699 PANTHER FAR UPSTREAM ELEMENT-BINDING PROTEIN 2-LIKE ISOFORM X1 94 686 - -
Bda13g01608 699 Pfam KH domain 232 298 IPR004088 GO:0003723
Bda13g01608 699 Pfam KH domain 139 204 IPR004088 GO:0003723
Bda13g01608 699 CDD KH-I 231 296 - -
Bda13g01608 699 MobiDBLite consensus disorder prediction 334 699 - -
Bda13g01608 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 214 IPR036612 GO:0003723
Bda13g01608 699 MobiDBLite consensus disorder prediction 1 58 - -
Bda13g01608 699 CDD KH-I 138 203 - -
Bda13g01608 699 MobiDBLite consensus disorder prediction 577 600 - -
Bda13g01608 699 MobiDBLite consensus disorder prediction 26 50 - -
Bda13g01608 699 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 94 686 - -
Bda13g01608 699 MobiDBLite consensus disorder prediction 645 668 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01608 K13210 FUBP; far upstream element-binding protein - zju:107420113 835.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00654 Bda-Chr2:47542942 Bda13g01608 Bda-Chr13:39607183 1.34E-06 dispersed
Bda13g01608 Bda-Chr13:39607183 Bda14g00371 Bda-Chr14:2694430 1.12E-11 dispersed
Bda13g01608 Bda-Chr13:39607183 Bda12g00358 Bda-Chr12:4146508 1.61E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37