Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01610 ATGGAGGAGGGAGCCTTTTGTGGAGTTTTTGATGGCCATGGAAAGAACGGCCACATAGTGAGCAACACGGTGAAAACCAGACTTCCATTACTGTTACTTAGCCAAAGGAAAGCTCTGGAAAAACTCCATACCTTCGAAGATGAAGTAAATGGTGATTTTCAGCATAACATCGTTGGGAGATCAGACGGTCAGAGAGAACCCAGCAAGAACTTCATTAAATGGATGAAAGCTGTGGGGAAAGCCTTCAAACTGATGGACAGGGAGATCGAGCTTCAAGAGAATTTTGATTTCTCATGCAGCGGGACGACAGCCGTAGCTGTTGTACAACAGCAGGGGGAAGATCTTGTAATAGCTAATTTGGGAGATTCAAGAGCTGTATTAGGTAGAATTACTGATGATGGAATCAAAGCCATTCAATTAACCACTGATTTAAAACCCGGTTTACCCACCGAAGCAGATAGAATAACAAGGTGCAATGGTCGAATAATGGCGCTGAAAGGCGAACCGCAAATCCAGCGAGTGTGGATGCCAAAAGAAGATTACCCCGGCCTGGCCATGTCAAGAGCATTTGGCGATTTCTCTCTCAAGAAACATGGCATTATTGCTGTCCCGGAAATCGCTTATTGCTGCTTAAATCCCAACGACCAGTTTATCGTTCTGGCCACTGATGGGGTGTGGGATGTGCTAAGTAACAGCCAAGTAGCAACCATGGTGTGGAAAGCTTGTAATGAAGAGGCAGCAGCAGAAGTAGTGGTGGGGGCAGCCATGGCAGCATGGAAGAAAAGGTGTCCATCGTCAAAGGTCAAGATCGATGACTGCACTGTGGTGTGCCTCTTTCTCCACAAGCAAAGATGA 855 46.32 MEEGAFCGVFDGHGKNGHIVSNTVKTRLPLLLLSQRKALEKLHTFEDEVNGDFQHNIVGRSDGQREPSKNFIKWMKAVGKAFKLMDREIELQENFDFSCSGTTAVAVVQQQGEDLVIANLGDSRAVLGRITDDGIKAIQLTTDLKPGLPTEADRITRCNGRIMALKGEPQIQRVWMPKEDYPGLAMSRAFGDFSLKKHGIIAVPEIAYCCLNPNDQFIVLATDGVWDVLSNSQVATMVWKACNEEAAAEVVVGAAMAAWKKRCPSSKVKIDDCTVVCLFLHKQR 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39617835 39618985 + Bda000481.1 Bda13g01610 19741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01610 284 SMART PP2C_4 1 278 IPR001932 -
Bda13g01610 284 Gene3D - 1 283 IPR036457 -
Bda13g01610 284 ProSiteProfiles PPM-type phosphatase domain profile. 1 280 IPR001932 -
Bda13g01610 284 Pfam Protein phosphatase 2C 64 256 IPR001932 -
Bda13g01610 284 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 283 - -
Bda13g01610 284 CDD PP2Cc 2 240 IPR001932 -
Bda13g01610 284 SUPERFAMILY PP2C-like 3 281 IPR036457 -
Bda13g01610 284 PANTHER ALPHABET, ISOFORM E-RELATED 1 283 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00611 Bda13g01610 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01610 Bda-Chr13:39617835 Bda06g00320 Bda-Chr6:5253823 1.58E-83 dispersed
Bda01g00611 Bda-Chr1:33108477 Bda13g01610 Bda-Chr13:39617835 4.01E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01610 - - vvi:100266178 362.073