Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01653 ATGCCGGAGGAGATGACGACAATCGATTACGTGATGGAGGCAGCCTCTGGACCCCACTTTTCCGGCCTCCGATTGGACGGCCTTCGCTCATCGTCGGCCTCTTCTTCGTCCCCTTGTTCTGCTACTCATTGCTCTTCTATGGCTACTTCCTTTTCCTCGTCAGACTCGAATGCTTTCAGGGAGCCCTTCGTCATCGGAGTTTCGGGGGGTACGGCTTCGGGTAAGACCACGGTGTGTGACATGATAATCCAGCAGCTTCATGATCACAGGGTTGTACTTGTCAATCAGGATTCTTTTTATCGTGGTTTGACACCCGAGGAATCCAAGTGCGTTCAGGAATATAACTTTGATCATCCTGATGCTTTTGACACCGATCAGCTTCTGGATTGCATTCAAAAGTTAAAGAGTGGGCAATCTTACCATGTTCCAATATATGATTTCAAAAAACATCACCGCTCTTCTGATAGCTTTCGGCAGGTAAATGCATCTGATGTTATTATTTTGGAAGGAATTCTTGTTTTCCATGATCAACGCGTCCGCAATCTAATGAATATGAAGATTTTTGTAGACACAGATGCCGATGTGAGGCTTGCACGCAGAATTAGACGCGATACTGTGGAGAGGGGAAGAGATATCGACTCTGTTCTTGAACAGTATGCGAAGTTTGTGAAACCTGCTTTTGATGATTTTATTCTGCCATCTAAGAAGTATGCTGATGTGATCATACCTCGCGGAGGGGATAACCACGTTGCCATTGATTTGATTGTCCAACATATTCGCACAAAGCTTGGTCAGCATGACCTTTGTAAGATATATCCCAACGTTACTGTAATTCTGTCAACATTTCAGATAAGAGGCATGCATACATTAATCAGAGATCGAGACATATCAAAGCATGATTTCGTATTTTACTCTGATAGACTTATTCGTCTGGTGGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTGGTTACTCCTACAGGTTCTGTATATACCGGTGTTGATTTTTGCAAGAAATTATGTGGAGTTTCAATTATTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGCTGCAAGGGAATAAAAATTGGAAAGATTCTTATTCACCGTGATGGAGACAATGGGAAGCAGCTTATATATGAAAAACTACCAAAGGATATATCAGAACGTCATGTCTTACTTCTTGACCCTGTTCTGGCTACAGGTAACTCTGCCAACCAAGCAATTGAGCTTTTAATACAAAAGGGTGTTCCGGAAGCGCACATTATATTTCTTAACCTAATATCCGCTCCTGAGGGCATCCATTGTGTTTTTAGACGATTTCCATCCTTAAAAATTGTCACTTCAGAAATAGACGCTGGATTGAACGATGAATTCCGTGTCATTCCCGGTCTGGGTGAGTTTGGTGATCGTTACTTTGGTACAGACGATTGA 1452 43.04 MPEEMTTIDYVMEAASGPHFSGLRLDGLRSSSASSSSPCSATHCSSMATSFSSSDSNAFREPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTPEESKCVQEYNFDHPDAFDTDQLLDCIQKLKSGQSYHVPIYDFKKHHRSSDSFRQVNASDVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDIDSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVTVILSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPEAHIIFLNLISAPEGIHCVFRRFPSLKIVTSEIDAGLNDEFRVIPGLGEFGDRYFGTDD 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39994696 40001458 + Bda000525.1 Bda13g01653 19784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01653 483 SUPERFAMILY PRTase-like 265 482 IPR029057 -
Bda13g01653 483 Gene3D - 266 481 IPR029057 -
Bda13g01653 483 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 480 IPR029930 GO:0004849|GO:0044206
Bda13g01653 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 255 IPR027417 -
Bda13g01653 483 PRINTS Uridine kinase signature 230 243 - -
Bda13g01653 483 PRINTS Uridine kinase signature 62 79 - -
Bda13g01653 483 PRINTS Uridine kinase signature 137 152 - -
Bda13g01653 483 PRINTS Uridine kinase signature 194 204 - -
Bda13g01653 483 PRINTS Uridine kinase signature 208 219 - -
Bda13g01653 483 PRINTS Uridine kinase signature 92 103 - -
Bda13g01653 483 Gene3D - 59 265 IPR027417 -
Bda13g01653 483 Pfam Phosphoribulokinase / Uridine kinase family 64 250 IPR006083 GO:0005524|GO:0016301
Bda13g01653 483 CDD UMPK 64 262 IPR000764 -
Bda13g01653 483 PANTHER URIDINE KINASE 16 480 - -
Bda13g01653 483 Pfam Uracil phosphoribosyltransferase 279 481 - -
Bda13g01653 483 CDD PRTases_typeI 339 454 IPR000836 -
Bda13g01653 483 TIGRFAM udk: uridine kinase 63 262 IPR000764 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01653 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - pop:7467715 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00954 Bda-Chr5:58040013 Bda13g01653 Bda-Chr13:39994696 2.37E-19 dispersed
Bda07g00427 Bda-Chr7:5462010 Bda13g01653 Bda-Chr13:39994696 0 dispersed
Bda09g00753 Bda-Chr9:13323214 Bda13g01653 Bda-Chr13:39994696 4.44E-15 dispersed
Bda13g01653 Bda-Chr13:39994696 Bda14g00899 Bda-Chr14:7003994 2.21E-17 dispersed
Bda13g01653 Bda-Chr13:39994696 Bda09g00447 Bda-Chr9:5882164 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1191 . . . Bda13g01653 . Bpe14g00215 . . . . Cma11g01493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61