Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01679 ATGGCTAGAGCAGTTCATCTCAGCTCAATCTTTTTAGTTTCATTGGCTTTGTTAGTCCCCACCCTTCATGCTGACATCGCCGAGTTCGATGACTACTGGCTTCATCGAGCACAGGAAGCCGAGAAGGCGGCTCTCGAGGCCTACCAGCCCGACCCCTTCAACGTCACCGACCAATTCAATATTCATGTTCACAGGTGGATGGGGACAAACAGCACGAGGAGGAACCTGAGAGGATCAAACAAACACAAAGGTCGATGTGTGGCCACAAATCCAATTGACCGATGCTGGCGGTGCGACAAGAACTGGGCCATGAACCGTAAGCGTCTAGCTAGGTGCGCGCTCGGCTTCGGGAGGAGGGCAACCGGAGGACTCGAAGGTCGCATTTACGTCGTCACTGACCCATCAGACTCCAACGTCTTGAACCCTAAACCTGGAACCCTCCGCCATGCAGTGATTCAGAAGCAGCCGCTCTGGATCATCTTCGCGAGGAGCATGGTCATTAAACTCTCGCAGGAGCTCATGATCACGAGCCACAAGACGATTGACGCTCGAGGGGAGAAGGTTCACATCGCTTACGGGGCCGGACTGACTATCCAATTCGTGAGGAATGTTATAATTCATGGGCTTCGTATACATGATATTGTGGCAGCTTCAGGCGGGATGATAAGGGATTCTGTTGAACATTATGGGCTCAGAACAGCCAGTGACGGAGATGGGATTTCTATATTTGGAGCAACCGACATTTGGCTTGACCATCTTTCCATGTCCAAATGCCAAGATGGATTGATCGACGCCATTCAAGGATCGACGGCCATCACTATCTCGAATTCCCACTTCACCGAGCACAATGATGTGATGCTGTTCGGCGCCAGCGACGCCTACAGAGGGGACAAGATTATGCAAGTGACGGTGGCGTTCAACCATTTCGGGCAAGGGTTGGTGCAGAGAATGCCGAGATGCAGGTGGGGGTTCGTCCACGTCGTCAACAATGACTATACCCACTGGCTAATGTACGCCATCGGAGGAAGCTCCGAACCCACCATTATCAGCCAAGGCAACCGGTTCATCGCTCCCGCCAACCTGGCCGCAAAAGAGGTGACGAAGAGAGACTACGCCCCGAAAAGCGTCTGGCAGAACTGGAACTGGCGGTCACAGGGCGACCTGATGAAGAACGGAGCTTTCTTCGTCCAATCTGGAAGGCCTTTGAAGATCAAGCCATTTAGCAGGCACGACATGATCAAAGCCAAGCCCGGGAAATTTGTTGGGAGGCTTACTCGCTTCTCTGGCTCGCTCAGCTGCCGGGTGGGTCGGCCATGTTAA 1320 53.18 MARAVHLSSIFLVSLALLVPTLHADIAEFDDYWLHRAQEAEKAALEAYQPDPFNVTDQFNIHVHRWMGTNSTRRNLRGSNKHKGRCVATNPIDRCWRCDKNWAMNRKRLARCALGFGRRATGGLEGRIYVVTDPSDSNVLNPKPGTLRHAVIQKQPLWIIFARSMVIKLSQELMITSHKTIDARGEKVHIAYGAGLTIQFVRNVIIHGLRIHDIVAASGGMIRDSVEHYGLRTASDGDGISIFGATDIWLDHLSMSKCQDGLIDAIQGSTAITISNSHFTEHNDVMLFGASDAYRGDKIMQVTVAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSEPTIISQGNRFIAPANLAAKEVTKRDYAPKSVWQNWNWRSQGDLMKNGAFFVQSGRPLKIKPFSRHDMIKAKPGKFVGRLTRFSGSLSCRVGRPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40172820 40174401 + Bda000551.1 Bda13g01679 19810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01679 439 Pfam Pectate lyase 196 355 IPR002022 -
Bda13g01679 439 SUPERFAMILY Pectin lyase-like 90 429 IPR011050 -
Bda13g01679 439 Gene3D - 89 432 IPR012334 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Bda13g01679 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Bda13g01679 439 PANTHER PECTATE LYASE 18-RELATED 7 439 IPR045032 GO:0030570
Bda13g01679 439 PANTHER PECTATE LYASE 7 439 - -
Bda13g01679 439 SMART amb_all 164 361 IPR002022 -
Bda13g01679 439 Pfam Pectate lyase, N terminus 26 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02254 Bda-Chr1:58299206 Bda13g01679 Bda-Chr13:40172820 0 dispersed
Bda01g02260 Bda-Chr1:58489689 Bda13g01679 Bda-Chr13:40172820 6.46E-51 dispersed
Bda13g01679 Bda-Chr13:40172820 Bda09g01316 Bda-Chr9:44937624 2.49E-165 dispersed
Bda03g00767 Bda-Chr3:6430415 Bda13g01679 Bda-Chr13:40172820 1.90E-44 transposed
Bda11g01233 Bda-Chr11:12847615 Bda13g01679 Bda-Chr13:40172820 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01679 K01728 - qsu:112023367 695.271