Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01679 | ATGGCTAGAGCAGTTCATCTCAGCTCAATCTTTTTAGTTTCATTGGCTTTGTTAGTCCCCACCCTTCATGCTGACATCGCCGAGTTCGATGACTACTGGCTTCATCGAGCACAGGAAGCCGAGAAGGCGGCTCTCGAGGCCTACCAGCCCGACCCCTTCAACGTCACCGACCAATTCAATATTCATGTTCACAGGTGGATGGGGACAAACAGCACGAGGAGGAACCTGAGAGGATCAAACAAACACAAAGGTCGATGTGTGGCCACAAATCCAATTGACCGATGCTGGCGGTGCGACAAGAACTGGGCCATGAACCGTAAGCGTCTAGCTAGGTGCGCGCTCGGCTTCGGGAGGAGGGCAACCGGAGGACTCGAAGGTCGCATTTACGTCGTCACTGACCCATCAGACTCCAACGTCTTGAACCCTAAACCTGGAACCCTCCGCCATGCAGTGATTCAGAAGCAGCCGCTCTGGATCATCTTCGCGAGGAGCATGGTCATTAAACTCTCGCAGGAGCTCATGATCACGAGCCACAAGACGATTGACGCTCGAGGGGAGAAGGTTCACATCGCTTACGGGGCCGGACTGACTATCCAATTCGTGAGGAATGTTATAATTCATGGGCTTCGTATACATGATATTGTGGCAGCTTCAGGCGGGATGATAAGGGATTCTGTTGAACATTATGGGCTCAGAACAGCCAGTGACGGAGATGGGATTTCTATATTTGGAGCAACCGACATTTGGCTTGACCATCTTTCCATGTCCAAATGCCAAGATGGATTGATCGACGCCATTCAAGGATCGACGGCCATCACTATCTCGAATTCCCACTTCACCGAGCACAATGATGTGATGCTGTTCGGCGCCAGCGACGCCTACAGAGGGGACAAGATTATGCAAGTGACGGTGGCGTTCAACCATTTCGGGCAAGGGTTGGTGCAGAGAATGCCGAGATGCAGGTGGGGGTTCGTCCACGTCGTCAACAATGACTATACCCACTGGCTAATGTACGCCATCGGAGGAAGCTCCGAACCCACCATTATCAGCCAAGGCAACCGGTTCATCGCTCCCGCCAACCTGGCCGCAAAAGAGGTGACGAAGAGAGACTACGCCCCGAAAAGCGTCTGGCAGAACTGGAACTGGCGGTCACAGGGCGACCTGATGAAGAACGGAGCTTTCTTCGTCCAATCTGGAAGGCCTTTGAAGATCAAGCCATTTAGCAGGCACGACATGATCAAAGCCAAGCCCGGGAAATTTGTTGGGAGGCTTACTCGCTTCTCTGGCTCGCTCAGCTGCCGGGTGGGTCGGCCATGTTAA | 1320 | 53.18 | MARAVHLSSIFLVSLALLVPTLHADIAEFDDYWLHRAQEAEKAALEAYQPDPFNVTDQFNIHVHRWMGTNSTRRNLRGSNKHKGRCVATNPIDRCWRCDKNWAMNRKRLARCALGFGRRATGGLEGRIYVVTDPSDSNVLNPKPGTLRHAVIQKQPLWIIFARSMVIKLSQELMITSHKTIDARGEKVHIAYGAGLTIQFVRNVIIHGLRIHDIVAASGGMIRDSVEHYGLRTASDGDGISIFGATDIWLDHLSMSKCQDGLIDAIQGSTAITISNSHFTEHNDVMLFGASDAYRGDKIMQVTVAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSEPTIISQGNRFIAPANLAAKEVTKRDYAPKSVWQNWNWRSQGDLMKNGAFFVQSGRPLKIKPFSRHDMIKAKPGKFVGRLTRFSGSLSCRVGRPC | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40172820 | 40174401 | + | Bda000551.1 | Bda13g01679 | 19810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01679 | 439 | Pfam | Pectate lyase | 196 | 355 | IPR002022 | - | |
Bda13g01679 | 439 | SUPERFAMILY | Pectin lyase-like | 90 | 429 | IPR011050 | - | |
Bda13g01679 | 439 | Gene3D | - | 89 | 432 | IPR012334 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 112 | 129 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 172 | 188 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 380 | 404 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 136 | 161 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 410 | 433 | IPR018082 | - | |
Bda13g01679 | 439 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Bda13g01679 | 439 | PANTHER | PECTATE LYASE 18-RELATED | 7 | 439 | IPR045032 | GO:0030570 | |
Bda13g01679 | 439 | PANTHER | PECTATE LYASE | 7 | 439 | - | - | |
Bda13g01679 | 439 | SMART | amb_all | 164 | 361 | IPR002022 | - | |
Bda13g01679 | 439 | Pfam | Pectate lyase, N terminus | 26 | 76 | IPR007524 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02254 | Bda-Chr1:58299206 | Bda13g01679 | Bda-Chr13:40172820 | 0 | dispersed | |
Bda01g02260 | Bda-Chr1:58489689 | Bda13g01679 | Bda-Chr13:40172820 | 6.46E-51 | dispersed | |
Bda13g01679 | Bda-Chr13:40172820 | Bda09g01316 | Bda-Chr9:44937624 | 2.49E-165 | dispersed | |
Bda03g00767 | Bda-Chr3:6430415 | Bda13g01679 | Bda-Chr13:40172820 | 1.90E-44 | transposed | |
Bda11g01233 | Bda-Chr11:12847615 | Bda13g01679 | Bda-Chr13:40172820 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01679 | K01728 | - | qsu:112023367 | 695.271 |