Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01680 ATGGAAACGGCAATACTGAAAAATGAAGAGAACCCGGGGAAAAGACGCCAATTTTGGTTGCCGGAAAATGAGACCGACTCTCTGAGATGTGTCAAAAGACGGCGAAGAAGCCGAGTGGCCAGTGCAGCTCCGGTTGGTTGTGGTGAGAGCCAGAATCAAAGTCAGAGTCAGAAGCAGCAAGTTGATCAAATTCCAGCTGCCACCACAACCAAGAGAAGTTCAAGATTTCGAGGAGTAAGCAGACATCGATGGACTGGTCGATACGAAGCTCATTTGTGGGATAAGCTGTCATGGAATATTACACAGAAAAAGAAGGGGAAACAAGGAGCTTATGATGACGAAGAATCAGCAGCAAGAGCATATGATTTAGCCGCACTGAAATACTGGGGGACGTCTACTTTCACCAATTTTCCTGTATCAGAATACGAAAGCGAGGTAAAAATTATGCAGCCATTGACAAAAGAGGAGTATCTTGCCTCTTTAAGAAGGAAGAGCAGTGGATTCTCGAGAGGTGTATCGAAGTACAGGGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCTAGAATAGGAAGAGTTTTTGGAAATAAATATCTCTATCTTGGCACTTACAGTACCCAAGAGGAAGCTGCTCGTGCCTATGACATAGCAGCGATTGAGTACAGAGGAAACAATGCCATCACAAATTTCGACCTGAGTTCATATATGAGATGGTTAAAGCCAGAATCAGACAGCGAAAATGCAGAATATGAAGCACAAATGGGGATATTTTGCTTGCCACCATCAGGGGTTATTCCACTTCATAATCATCCTGCCATGACTGTTTTCAGCAAGCTTCTTTTCGGAACTATGCACATTAAATCTTATGATTGGGTGGTCGATGCTACTCGAGGTGATTCGACATCGAGCAGGAATCCACCAATGCCCCCGGACGGAGTCCGATTGTCCAAAGTCAAGGTCGACTCGGATTTTACAGCCCCTTGCAATGCATCCATCCTTTATCCAGCCGACGGAGGCAACATGCATTGCTTCACAGCCATCACAGCTTGTGCTGTTTTAGACGTGCTTGGCCCCCCATACTCTGATCCCGACGGCCGTCACTGCACGTACTATCGAGATCTTCCCTTCGCCACCTTTGCAGTTGAGGGGGTTGCAGTGGGAGAGGAGGATGAAGAGAAGTATGCTTGGCTTCAAGAGAGAGAGACGGTCCAGGAGTTAGCAGTAGTCGGAGCGCCGTACAGAGGCCCGAAAATTGTGAAGAGTTCATTCGATTACCAATAG 1284 46.73 METAILKNEENPGKRRQFWLPENETDSLRCVKRRRRSRVASAAPVGCGESQNQSQSQKQQVDQIPAATTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDDEESAARAYDLAALKYWGTSTFTNFPVSEYESEVKIMQPLTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGNNAITNFDLSSYMRWLKPESDSENAEYEAQMGIFCLPPSGVIPLHNHPAMTVFSKLLFGTMHIKSYDWVVDATRGDSTSSRNPPMPPDGVRLSKVKVDSDFTAPCNASILYPADGGNMHCFTAITACAVLDVLGPPYSDPDGRHCTYYRDLPFATFAVEGVAVGEEDEEKYAWLQERETVQELAVVGAPYRGPKIVKSSFDYQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40175782 40181792 + Bda000552.3 Bda13g01680 19811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01680 427 CDD cupin_ADO 255 362 - -
Bda13g01680 427 SUPERFAMILY RmlC-like cupins 252 379 IPR011051 -
Bda13g01680 427 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 Gene3D AP2/ERF domain 173 229 IPR036955 GO:0003700|GO:0006355
Bda13g01680 427 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Bda13g01680 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 254 - -
Bda13g01680 427 SMART rav1_2 75 144 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 MobiDBLite consensus disorder prediction 1 77 - -
Bda13g01680 427 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Bda13g01680 427 MobiDBLite consensus disorder prediction 7 31 - -
Bda13g01680 427 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 SUPERFAMILY DNA-binding domain 74 140 IPR016177 GO:0003677
Bda13g01680 427 MobiDBLite consensus disorder prediction 46 74 - -
Bda13g01680 427 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 254 - -
Bda13g01680 427 ProSiteProfiles AP2/ERF domain profile. 75 138 IPR001471 GO:0003700|GO:0006355
Bda13g01680 427 Gene3D Jelly Rolls 230 374 IPR014710 -
Bda13g01680 427 Pfam PCO_ADO 254 419 IPR012864 GO:0016702
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01244 Bda13g01680 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00018 Bda-Chr10:354206 Bda13g01680 Bda-Chr13:40175782 7.04E-07 dispersed
Bda13g00676 Bda-Chr13:7695782 Bda13g01680 Bda-Chr13:40175782 7.42E-41 dispersed
Bda13g01680 Bda-Chr13:40175782 Bda03g00160 Bda-Chr3:1319585 2.70E-06 dispersed
Bda01g02255 Bda-Chr1:58302655 Bda13g01680 Bda-Chr13:40175782 7.38E-08 transposed
Bda01g02282 Bda-Chr1:59204511 Bda13g01680 Bda-Chr13:40175782 9.73E-09 transposed
Bda03g01557 Bda-Chr3:54748972 Bda13g01680 Bda-Chr13:40175782 4.33E-07 transposed
Bda10g00763 Bda-Chr10:42073745 Bda13g01680 Bda-Chr13:40175782 1.91E-07 transposed
Bda01g01244 Bda-Chr1:47834947 Bda13g01680 Bda-Chr13:40175782 5.16E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16954 PF07847 PCO_ADO 7.70E-60 CL0029 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01680 - - rcu:8276029 372.474