Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01690 ATGGAAGTAGCTCCGACTCCGATTGCCACCATTAACAGCGGGGTTAAATCTCCGGAAGCTGATTCTGAAACCCCGACGAAGATCCAGCCGGGTGGAAAGCTTTCACCTTTTAGTAATGGCGTCCTCAAGCGTCACGGTTTTGCGGCTTCTCCTGTTTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGAGAGTTTATGCCCTCTCCTTCCGCCGCTTCTAATGACCCTTTTTCTCTCAAATGCGCAGCCTGCGGTTGTCACCGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCTGGTGCCATTTCCACGCATGTAATCGAATATCAGCCGCACCACCGCCATCACCCACCTCCGCCGCTACATCCGACCTCCAACCGTAGCCCGAATTCTTCCTCGCCACCGCCAATCTCCTCCTCTTACTACCCCTCAGCCCCACACATGCTTCTCGCTCTGTCGGCCGGACTGTCGGCTCATCCCGAAATTGCACCGGCAATGGTCTCTCCGACGACCGCAAGAAAACGGTTCAGAACAAAATTCAGCACAGATCAGAAAGAGAAGATGCACGAGTTTGCAGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGACCTGGTTCGAGAATTCTGCAGCGAAGTCGGAGTAGAGAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAACGCTTTTGCTACTAAGAAGGACGTCAATGGCGAAAGGCCGATCTTGCAAAATTCCCTGAACAACGGCAACAACTACGAGGAAAACGCCATTAATCACCACCACTCCATGGTTCAGAATCCGAATCACTATCACAACGACGGAACGCTACATTTTGGCACTAATGGGTCGTCTTCTTCCTCTTGA 912 51.1 MEVAPTPIATINSGVKSPEADSETPTKIQPGGKLSPFSNGVLKRHGFAASPVSYKECLKNHAASIGSHALDGCGEFMPSPSAASNDPFSLKCAACGCHRNFHRREPEDQPLSGAISTHVIEYQPHHRHHPPPPLHPTSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSAHPEIAPAMVSPTTARKRFRTKFSTDQKEKMHEFAEKLGWKFQKRDEDLVREFCSEVGVEKGVLKVWMHNNKNAFATKKDVNGERPILQNSLNNGNNYEENAINHHHSMVQNPNHYHNDGTLHFGTNGSSSSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40265752 40266663 - Bda000562.1 Bda13g01690 19821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01690 303 MobiDBLite consensus disorder prediction 124 152 - -
Bda13g01690 303 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Bda13g01690 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 243 IPR006455 -
Bda13g01690 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Bda13g01690 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Bda13g01690 303 Gene3D - 178 248 - -
Bda13g01690 303 MobiDBLite consensus disorder prediction 10 33 - -
Bda13g01690 303 SUPERFAMILY Homeodomain-like 177 243 IPR009057 -
Bda13g01690 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 268 - -
Bda13g01690 303 MobiDBLite consensus disorder prediction 1 39 - -
Bda13g01690 303 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01690 - - - jre:108985975 335.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01865 Bda-Chr11:53736302 Bda13g01690 Bda-Chr13:40265752 2.85E-47 dispersed
Bda12g00161 Bda-Chr12:1551063 Bda13g01690 Bda-Chr13:40265752 1.14E-94 dispersed
Bda13g01690 Bda-Chr13:40265752 Bda06g00184 Bda-Chr6:2514767 2.44E-51 dispersed
Bda13g01690 Bda-Chr13:40265752 Bda07g01353 Bda-Chr7:16358501 1.38E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16956 PF04770 ZF-HD_dimer 1.40E-28 No_clan Bda TF