Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01690 ATGGAAGTAGCTCCGACTCCGATTGCCACCATTAACAGCGGGGTTAAATCTCCGGAAGCTGATTCTGAAACCCCGACGAAGATCCAGCCGGGTGGAAAGCTTTCACCTTTTAGTAATGGCGTCCTCAAGCGTCACGGTTTTGCGGCTTCTCCTGTTTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGAGAGTTTATGCCCTCTCCTTCCGCCGCTTCTAATGACCCTTTTTCTCTCAAATGCGCAGCCTGCGGTTGTCACCGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCTGGTGCCATTTCCACGCATGTAATCGAATATCAGCCGCACCACCGCCATCACCCACCTCCGCCGCTACATCCGACCTCCAACCGTAGCCCGAATTCTTCCTCGCCACCGCCAATCTCCTCCTCTTACTACCCCTCAGCCCCACACATGCTTCTCGCTCTGTCGGCCGGACTGTCGGCTCATCCCGAAATTGCACCGGCAATGGTCTCTCCGACGACCGCAAGAAAACGGTTCAGAACAAAATTCAGCACAGATCAGAAAGAGAAGATGCACGAGTTTGCAGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGACCTGGTTCGAGAATTCTGCAGCGAAGTCGGAGTAGAGAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAACGCTTTTGCTACTAAGAAGGACGTCAATGGCGAAAGGCCGATCTTGCAAAATTCCCTGAACAACGGCAACAACTACGAGGAAAACGCCATTAATCACCACCACTCCATGGTTCAGAATCCGAATCACTATCACAACGACGGAACGCTACATTTTGGCACTAATGGGTCGTCTTCTTCCTCTTGA 912 51.1 MEVAPTPIATINSGVKSPEADSETPTKIQPGGKLSPFSNGVLKRHGFAASPVSYKECLKNHAASIGSHALDGCGEFMPSPSAASNDPFSLKCAACGCHRNFHRREPEDQPLSGAISTHVIEYQPHHRHHPPPPLHPTSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSAHPEIAPAMVSPTTARKRFRTKFSTDQKEKMHEFAEKLGWKFQKRDEDLVREFCSEVGVEKGVLKVWMHNNKNAFATKKDVNGERPILQNSLNNGNNYEENAINHHHSMVQNPNHYHNDGTLHFGTNGSSSSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40265752 40266663 - Bda000562.1 Bda13g01690 19821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01690 303 MobiDBLite consensus disorder prediction 124 152 - -
Bda13g01690 303 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Bda13g01690 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 243 IPR006455 -
Bda13g01690 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Bda13g01690 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Bda13g01690 303 Gene3D - 178 248 - -
Bda13g01690 303 MobiDBLite consensus disorder prediction 10 33 - -
Bda13g01690 303 SUPERFAMILY Homeodomain-like 177 243 IPR009057 -
Bda13g01690 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 268 - -
Bda13g01690 303 MobiDBLite consensus disorder prediction 1 39 - -
Bda13g01690 303 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01865 Bda-Chr11:53736302 Bda13g01690 Bda-Chr13:40265752 2.85E-47 dispersed
Bda12g00161 Bda-Chr12:1551063 Bda13g01690 Bda-Chr13:40265752 1.14E-94 dispersed
Bda13g01690 Bda-Chr13:40265752 Bda06g00184 Bda-Chr6:2514767 2.44E-51 dispersed
Bda13g01690 Bda-Chr13:40265752 Bda07g01353 Bda-Chr7:16358501 1.38E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16956 PF04770 ZF-HD_dimer 1.40E-28 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01690 - - jre:108985975 335.495