Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01701 ATGGAGGGACTGAGAAGGTCGCCGCCTGTAGGGGCGGCTGGTGCGGTGGTGGTGGTGGTGACTGTGTGTTTTTTAGGGATGATGGTGCAAGAAGTTTCAGCTACTCGGTGGATTGTTGGAAGTTACTTGGGGTGGACAACCGATGTCAACTACACTGTTTGGGCTCAAGATAAGCAGTTCTACAATGGCGATTGGCTCTTTTTTGTTTACGACCGGAATCAAAAGAACGTATTGGAGGTGAACCAAACGGACTACGAGGCATGCAACTCCGATCACCCGCTTCATAATTGGACGACGGGGCACGGGAGAGATGTGGTGCCGCTCAACGTCACAAGGGACTACTATTTCATTAGCGGCAAAGGTTTCTGCTATGGAGGTATGAAGTTGGCCGTCCAGGTGGAGAATTTGCCTCCTCCTCCGTCGTCTTTGCCGGTGGATCAAAAGAATTCAGCTCCTCCAGCTCGAACTCATAATCGGCGCCGCCTCATTATTCCGGTGGCATTGGCGGTCGGAGTCATTTGGAAAGCCTTTGTTTGGCTGTGGTAG 546 51.83 MEGLRRSPPVGAAGAVVVVVTVCFLGMMVQEVSATRWIVGSYLGWTTDVNYTVWAQDKQFYNGDWLFFVYDRNQKNVLEVNQTDYEACNSDHPLHNWTTGHGRDVVPLNVTRDYYFISGKGFCYGGMKLAVQVENLPPPPSSLPVDQKNSAPPARTHNRRRLIIPVALAVGVIWKAFVWLW 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40376899 40377559 - Bda000573.1 Bda13g01701 19832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01701 181 PANTHER LAMIN-LIKE PROTEIN 12 172 - -
Bda13g01701 181 Pfam Plastocyanin-like domain 45 127 IPR003245 GO:0009055
Bda13g01701 181 SUPERFAMILY Cupredoxins 34 133 IPR008972 -
Bda13g01701 181 Gene3D - 33 136 IPR008972 -
Bda13g01701 181 PANTHER BLUE COPPER PROTEIN 12 172 IPR039391 GO:0009055
Bda13g01701 181 ProSiteProfiles Phytocyanin domain profile. 35 135 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01701 - - - mesc:110608622 255.758
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00563 Bda-Chr12:9658879 Bda13g01701 Bda-Chr13:40376899 1.51E-28 dispersed
Bda13g01701 Bda-Chr13:40376899 Bda02g00214 Bda-Chr2:37703947 2.24E-15 dispersed
Bda01g01224 Bda-Chr1:47609870 Bda13g01701 Bda-Chr13:40376899 1.02E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1592 . . . Bda13g01701 . Bpe14g00163 . . Cmo14g00570 Cmo11g01202 . . Car11g00977 . . Cpe03g00492 . . . . . . . . Cla10g01478 Cam10g1523 Cec10g1561 Cco10g1539 Clacu10g1536 Cmu10g2300 Cre10g1683 . . . . . . . . Blo17g00374 . . . . . Bma01g01054 Bma02g00433 . . . . . . . Cpe04g00183 . . . . . . . . . . . . . . . . Csa03g03792 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38