Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01705 ATGCTTATTGGCGAACCTGGTGTTGGGAAAACTGCAATTTCTGAAGGTCTTGCTCAACGAATCGTTCAAGGCGATGTACCTCAGGCACTGATGAATAGACGGAATATTGTTTTGCTACAGCTAATTTCTCTTGACATGGGTGCTTTGATTGGAGGAGCAAAATATCAGGGAGAGTTTGAGGATAGGCTCAAGGCTGTGCTAAAGGAAGTTACTGAATCAGATGGTCAGGTCGTTCTTTTCATCGATGAGATCCACACCGTTGTTGGAGCAGGGACCCCTACAAATCTTTTGAAGCCTATGCTCGGTAGGGGGGAACTACGATGCATTGGCACAACAACGCTAGATGAGTATCGCAAATATATTGAGAAAGATCCTGCCTTGGAAAGACGTTTCCAGCAAGTTTATGTTGATCAGCCTACAGTTGAAGATACAATTTCTATTCTCCAAGGACTTCGTGAAAGATACGAGCTACATCACGGAGTTCGTATTTCAGATGGTGCCCTTGTGGAAGCTGCAATACTCTCGGATCGTTATATAAGTGGACGGTTTTTGTCTGACAAAGGTAATCATTTTCCTTTCCGTGATGAAGCAGCTGCGAAACTGAAAATGGAGATTACCTCGAAGTCGACTGCTGTTGACGAGATCAATCGAGCAGTGCTGAAGTTAGAGATGGAGAGGCTTTTGCTCACTAATGATACTGATAAAGCTTCTAAAGAAAGGTTGAATCGCCTTGACGGCGAGTTGTCTCTCTTAAAAGAGAAACAAGCCCAGCTCACCGAGCAGTGGGAGCATGAAAAATCGGTCATGGCAAGACTTCAGTCGATCAAAGAAGAGTTGGAAAGAGTTCAAAAGAGGATTGCAGACAGGAAGATGAAGATCCATGTCAGCGAAGCTGCAGTTCAGCTCCTTGGAAACCTTGGCTACGATCCAAACTATGGAGCCAGGCCGGTGAAGGTTTATAACCTATGCATAGAAGAATCATACGATCCATCTCATTTTCATGGCCGTGTAGAGGCATTTCCTTTTGATGACAACCATGTCCCTCCTCTTCAAATGATTAAGCTTTTCTGCGAGAGTGTTCATTCGTGGCTATCATGTGCAGGCAAAGGTCGAACGGGCCTGATGGTATGTGCCTATCTTGTATACAGTGGCATGTCAGCGGAGGAGGCGCTCCAGTTGTATGCCCATAGGAGGACCACCAATAATGAAGGGGTAAGAACAGTGTTTTCAAATGAACAGGTCTCGATTCCTAGCCAACGACGTTACGTGGGCTACTGGGCAAGTTTACTTTCTTTTCCTAAGGGTGTTGCTCATGGACCTCCAGATGTAAAATTTTCAAAAGCTTGTAGTAGGGAACTGCGCCGAATTCGGCTTTATGACACAATTAATATTGAATCAGTAATCTTTGTCATCACGGAGCTCCAAGAAGCTTCAAGTAAATTGTACACTCCATCTGTCGAAGTTACGCGGAGTTATTGCAGGCGAATAAAGAAAGGTTATCAGAGAAGCGACAGCCATCAGTACTATCTCTCTTTTGTCGAAGATGATCAAAAAAGGAACATGACAGAAGAAGAAAAATATCATAATGTAGTTCAAATGGACACGGAGATTCCAGTATTCTACGAAAAGTCCTGTCTTGACTACAATTTCAATAAACCTTTAACAGTAACTGGCGACGTGCGAGTCATATTCTATCAGAAAATGATTGGAGGGCGTCTCTTCTATGCCTGCTTCAACACATCCTTCATCAAGAACAGCTTGCTTCAGCTTACTGCTGGTGAGTTGGATAAAGTTGGGAGTAGAGGTAAATCAATATGTGGCCCCGCCTTTTGCTTGGAGCTCCTATTCGGACCTGCCAATGCTAAACACTCGTTTTCGACTTGGTCCGACAATGGTGATTCTTCAGACGAGGCATTCTAA 1920 44.06 MLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRNIVLLQLISLDMGALIGGAKYQGEFEDRLKAVLKEVTESDGQVVLFIDEIHTVVGAGTPTNLLKPMLGRGELRCIGTTTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILQGLRERYELHHGVRISDGALVEAAILSDRYISGRFLSDKGNHFPFRDEAAAKLKMEITSKSTAVDEINRAVLKLEMERLLLTNDTDKASKERLNRLDGELSLLKEKQAQLTEQWEHEKSVMARLQSIKEELERVQKRIADRKMKIHVSEAAVQLLGNLGYDPNYGARPVKVYNLCIEESYDPSHFHGRVEAFPFDDNHVPPLQMIKLFCESVHSWLSCAGKGRTGLMVCAYLVYSGMSAEEALQLYAHRRTTNNEGVRTVFSNEQVSIPSQRRYVGYWASLLSFPKGVAHGPPDVKFSKACSRELRRIRLYDTINIESVIFVITELQEASSKLYTPSVEVTRSYCRRIKKGYQRSDSHQYYLSFVEDDQKRNMTEEEKYHNVVQMDTEIPVFYEKSCLDYNFNKPLTVTGDVRVIFYQKMIGGRLFYACFNTSFIKNSLLQLTAGELDKVGSRGKSICGPAFCLELLFGPANAKHSFSTWSDNGDSSDEAF 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40391686 40411089 - Bda000576.1 Bda13g01705 19836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01705 639 Gene3D Protein tyrosine phosphatase superfamily 309 448 IPR029021 -
Bda13g01705 639 PANTHER ATP-DEPENDENT CLP PROTEASE 2 282 - -
Bda13g01705 639 SMART AAA_5 1 140 IPR003593 -
Bda13g01705 639 Pfam ATPase family associated with various cellular activities (AAA) 1 132 IPR003959 GO:0005524|GO:0016887
Bda13g01705 639 PANTHER ATP-DEPENDENT CLP PROTEASE 279 319 - -
Bda13g01705 639 Coils Coil 265 292 - -
Bda13g01705 639 Pfam AAA lid domain 140 244 IPR041546 -
Bda13g01705 639 PANTHER BNAC09G42450D PROTEIN 2 282 - -
Bda13g01705 639 CDD AAA 1 134 - -
Bda13g01705 639 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 314 398 IPR029021 -
Bda13g01705 639 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 540 618 IPR035892 -
Bda13g01705 639 ProSiteProfiles Phosphatase tensin-type domain profile. 309 433 IPR029023 -
Bda13g01705 639 PANTHER BNAC09G42450D PROTEIN 279 319 - -
Bda13g01705 639 Pfam C-terminal, D2-small domain, of ClpB protein 276 318 IPR019489 -
Bda13g01705 639 Gene3D - 141 308 IPR027417 -
Bda13g01705 639 Gene3D - 1 140 IPR027417 -
Bda13g01705 639 ProSiteProfiles C2 tensin-type domain profile. 454 619 IPR014020 -
Bda13g01705 639 Pfam C2 domain of PTEN tumour-suppressor protein 533 616 IPR014020 -
Bda13g01705 639 Coils Coil 241 261 - -
Bda13g01705 639 Gene3D - 486 621 - -
Bda13g01705 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 299 IPR027417 -
Bda13g01705 639 SMART PTEN_C2_2 475 618 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01705 Bda-Chr13:40391686 Bda04g01287 Bda-Chr4:63362453 1.14E-97 dispersed
Bda14g01451 Bda-Chr14:19537856 Bda13g01705 Bda-Chr13:40391686 2.07E-20 dispersed
Bda15g00847 Bda-Chr15:13141380 Bda13g01705 Bda-Chr13:40391686 1.90E-20 dispersed
Bda13g01705 Bda-Chr13:40391686 Bda13g01707 Bda-Chr13:40414993 3.74E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01705 K03695 K01110 zju:107415906 469.544