Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01705 ATGCTTATTGGCGAACCTGGTGTTGGGAAAACTGCAATTTCTGAAGGTCTTGCTCAACGAATCGTTCAAGGCGATGTACCTCAGGCACTGATGAATAGACGGAATATTGTTTTGCTACAGCTAATTTCTCTTGACATGGGTGCTTTGATTGGAGGAGCAAAATATCAGGGAGAGTTTGAGGATAGGCTCAAGGCTGTGCTAAAGGAAGTTACTGAATCAGATGGTCAGGTCGTTCTTTTCATCGATGAGATCCACACCGTTGTTGGAGCAGGGACCCCTACAAATCTTTTGAAGCCTATGCTCGGTAGGGGGGAACTACGATGCATTGGCACAACAACGCTAGATGAGTATCGCAAATATATTGAGAAAGATCCTGCCTTGGAAAGACGTTTCCAGCAAGTTTATGTTGATCAGCCTACAGTTGAAGATACAATTTCTATTCTCCAAGGACTTCGTGAAAGATACGAGCTACATCACGGAGTTCGTATTTCAGATGGTGCCCTTGTGGAAGCTGCAATACTCTCGGATCGTTATATAAGTGGACGGTTTTTGTCTGACAAAGGTAATCATTTTCCTTTCCGTGATGAAGCAGCTGCGAAACTGAAAATGGAGATTACCTCGAAGTCGACTGCTGTTGACGAGATCAATCGAGCAGTGCTGAAGTTAGAGATGGAGAGGCTTTTGCTCACTAATGATACTGATAAAGCTTCTAAAGAAAGGTTGAATCGCCTTGACGGCGAGTTGTCTCTCTTAAAAGAGAAACAAGCCCAGCTCACCGAGCAGTGGGAGCATGAAAAATCGGTCATGGCAAGACTTCAGTCGATCAAAGAAGAGTTGGAAAGAGTTCAAAAGAGGATTGCAGACAGGAAGATGAAGATCCATGTCAGCGAAGCTGCAGTTCAGCTCCTTGGAAACCTTGGCTACGATCCAAACTATGGAGCCAGGCCGGTGAAGGTTTATAACCTATGCATAGAAGAATCATACGATCCATCTCATTTTCATGGCCGTGTAGAGGCATTTCCTTTTGATGACAACCATGTCCCTCCTCTTCAAATGATTAAGCTTTTCTGCGAGAGTGTTCATTCGTGGCTATCATGTGCAGGCAAAGGTCGAACGGGCCTGATGGTATGTGCCTATCTTGTATACAGTGGCATGTCAGCGGAGGAGGCGCTCCAGTTGTATGCCCATAGGAGGACCACCAATAATGAAGGGGTAAGAACAGTGTTTTCAAATGAACAGGTCTCGATTCCTAGCCAACGACGTTACGTGGGCTACTGGGCAAGTTTACTTTCTTTTCCTAAGGGTGTTGCTCATGGACCTCCAGATGTAAAATTTTCAAAAGCTTGTAGTAGGGAACTGCGCCGAATTCGGCTTTATGACACAATTAATATTGAATCAGTAATCTTTGTCATCACGGAGCTCCAAGAAGCTTCAAGTAAATTGTACACTCCATCTGTCGAAGTTACGCGGAGTTATTGCAGGCGAATAAAGAAAGGTTATCAGAGAAGCGACAGCCATCAGTACTATCTCTCTTTTGTCGAAGATGATCAAAAAAGGAACATGACAGAAGAAGAAAAATATCATAATGTAGTTCAAATGGACACGGAGATTCCAGTATTCTACGAAAAGTCCTGTCTTGACTACAATTTCAATAAACCTTTAACAGTAACTGGCGACGTGCGAGTCATATTCTATCAGAAAATGATTGGAGGGCGTCTCTTCTATGCCTGCTTCAACACATCCTTCATCAAGAACAGCTTGCTTCAGCTTACTGCTGGTGAGTTGGATAAAGTTGGGAGTAGAGGTAAATCAATATGTGGCCCCGCCTTTTGCTTGGAGCTCCTATTCGGACCTGCCAATGCTAAACACTCGTTTTCGACTTGGTCCGACAATGGTGATTCTTCAGACGAGGCATTCTAA 1920 44.06 MLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRNIVLLQLISLDMGALIGGAKYQGEFEDRLKAVLKEVTESDGQVVLFIDEIHTVVGAGTPTNLLKPMLGRGELRCIGTTTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILQGLRERYELHHGVRISDGALVEAAILSDRYISGRFLSDKGNHFPFRDEAAAKLKMEITSKSTAVDEINRAVLKLEMERLLLTNDTDKASKERLNRLDGELSLLKEKQAQLTEQWEHEKSVMARLQSIKEELERVQKRIADRKMKIHVSEAAVQLLGNLGYDPNYGARPVKVYNLCIEESYDPSHFHGRVEAFPFDDNHVPPLQMIKLFCESVHSWLSCAGKGRTGLMVCAYLVYSGMSAEEALQLYAHRRTTNNEGVRTVFSNEQVSIPSQRRYVGYWASLLSFPKGVAHGPPDVKFSKACSRELRRIRLYDTINIESVIFVITELQEASSKLYTPSVEVTRSYCRRIKKGYQRSDSHQYYLSFVEDDQKRNMTEEEKYHNVVQMDTEIPVFYEKSCLDYNFNKPLTVTGDVRVIFYQKMIGGRLFYACFNTSFIKNSLLQLTAGELDKVGSRGKSICGPAFCLELLFGPANAKHSFSTWSDNGDSSDEAF 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40391686 40411089 - Bda000576.1 Bda13g01705 19836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01705 639 Gene3D Protein tyrosine phosphatase superfamily 309 448 IPR029021 -
Bda13g01705 639 PANTHER ATP-DEPENDENT CLP PROTEASE 2 282 - -
Bda13g01705 639 SMART AAA_5 1 140 IPR003593 -
Bda13g01705 639 Pfam ATPase family associated with various cellular activities (AAA) 1 132 IPR003959 GO:0005524|GO:0016887
Bda13g01705 639 PANTHER ATP-DEPENDENT CLP PROTEASE 279 319 - -
Bda13g01705 639 Coils Coil 265 292 - -
Bda13g01705 639 Pfam AAA lid domain 140 244 IPR041546 -
Bda13g01705 639 PANTHER BNAC09G42450D PROTEIN 2 282 - -
Bda13g01705 639 CDD AAA 1 134 - -
Bda13g01705 639 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 314 398 IPR029021 -
Bda13g01705 639 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 540 618 IPR035892 -
Bda13g01705 639 ProSiteProfiles Phosphatase tensin-type domain profile. 309 433 IPR029023 -
Bda13g01705 639 PANTHER BNAC09G42450D PROTEIN 279 319 - -
Bda13g01705 639 Pfam C-terminal, D2-small domain, of ClpB protein 276 318 IPR019489 -
Bda13g01705 639 Gene3D - 141 308 IPR027417 -
Bda13g01705 639 Gene3D - 1 140 IPR027417 -
Bda13g01705 639 ProSiteProfiles C2 tensin-type domain profile. 454 619 IPR014020 -
Bda13g01705 639 Pfam C2 domain of PTEN tumour-suppressor protein 533 616 IPR014020 -
Bda13g01705 639 Coils Coil 241 261 - -
Bda13g01705 639 Gene3D - 486 621 - -
Bda13g01705 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 299 IPR027417 -
Bda13g01705 639 SMART PTEN_C2_2 475 618 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01705 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB K01110 zju:107415906 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01705 Bda-Chr13:40391686 Bda04g01287 Bda-Chr4:63362453 1.14E-97 dispersed
Bda14g01451 Bda-Chr14:19537856 Bda13g01705 Bda-Chr13:40391686 2.07E-20 dispersed
Bda15g00847 Bda-Chr15:13141380 Bda13g01705 Bda-Chr13:40391686 1.90E-20 dispersed
Bda13g01705 Bda-Chr13:40391686 Bda13g01707 Bda-Chr13:40414993 3.74E-18 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1602 . . . Bda13g01705 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00378 . . . . . . Bma02g00437 . . . . . . . . . Bhi11g02949 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda11g00846 . 23 333 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 9.7e-123 436.8
Bda15g00697 . 6 900 Protein tyrosine phosphatase (PTP) family AT5G23720 61.1 1.7e-299 1025.4
Bda03g01256 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.4 2.3e-40 162.2
Bda14g01416 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 2.4e-72 268.5
Bda14g00375 . 17 293 Protein tyrosine phosphatase (PTP) family AT3G52180 70.3 4.0e-114 407.9
Bda14g00209 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.6 3.7e-112 401.4
Bda01g01276 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 7.1e-198 686.8
Bda14g01411 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 53.7 9.7e-67 250.4
Bda13g01849 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.6 4.8e-50 194.9
Bda15g00865 . 35 142 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 8.6e-39 157.5
Bda07g00455 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 56.7 2.5e-99 359.0
Bda01g02034 . 6 269 Protein tyrosine phosphatase (PTP) family AT2G35680 51.7 6.1e-77 284.6
Bda01g02034 . 27 200 Protein tyrosine phosphatase (PTP) family AT5G56610 53.4 4.5e-45 177.9
Bda14g01411 . 35 209 Protein tyrosine phosphatase (PTP) family AT4G03960 66.3 1.8e-68 255.8
Bda13g01849 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.1 3.6e-53 204.9
Bda15g00865 . 24 142 Protein tyrosine phosphatase (PTP) family AT4G03960 60.5 3.3e-38 155.2
Bda13g01849 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 3.1e-84 308.1
Bda14g01411 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 59.5 1.9e-57 219.2
Bda15g00865 . 30 142 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 9.8e-38 153.7
Bda14g00109 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 61.4 2.3e-55 214.2
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda14g01451 BCT 32 615 Protein tyrosine phosphatase (PTP) family AT3G19420 66.8 5.1e-223 770.8
Bda15g00847 BCT 32 608 Protein tyrosine phosphatase (PTP) family AT3G19420 65.9 7.8e-216 746.9
Bda10g00214 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.5e-187 651.4
Bda10g00247 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.9e-186 647.9
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda07g00669 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.2 1.5e-75 279.6
Bda06g01290 . 10 276 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 9.4e-101 363.6
Bda05g00942 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 69.9 9.3e-287 982.6
Bda05g00942 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.3e-261 899.0
Bda05g00942 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.6 3.9e-186 648.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38