Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01726 ATGGGGAGAGGAAGAGTAGAACTCAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTACGAGCTTTCTGTTCTCTGTGATGCAGAGGTTGCTCTTATTATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAGAACCCTGGAAAGGTACCAAAAATGTAGCTATGGCGCGGTGGAAGTCAACAGACCTTGCAAAGAACTTGAGCAGAGCAGCTACAGAGAGTACTTGAAGTTGAAATCCAGATTTGAGTCCCTACAAAAAACTCAAAGGAGAAATCTGCTTGGGGAAGAATTGGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAACGTCAGCTGGAAGCATCCTTAAAGCAAGTCAGATCCACCAAGGTAATCCGAATCTATTACATTAACACAATCAATGAAATTTACAGAAAATGCAAAAGTTCATTGAGGAATCATTTGAATCTTCTCCAGAAACCCTAG 528 41.86 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLRTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQKTQRRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKVIRIYYINTINEIYRKCKSSLRNHLNLLQKP 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40558652 40564246 + Bda000599.1 Bda13g01726 19857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01726 175 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 146 - -
Bda13g01726 175 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 146 - -
Bda13g01726 175 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Bda13g01726 175 Coils Coil 123 146 - -
Bda13g01726 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bda13g01726 175 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bda13g01726 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g01726 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda13g01726 175 Pfam K-box region 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00226 Bda-Chr8:2229689 Bda13g01726 Bda-Chr13:40558652 4.15E-60 dispersed
Bda13g01726 Bda-Chr13:40558652 Bda14g00875 Bda-Chr14:6779849 7.88E-64 dispersed
Bda01g01197 Bda-Chr1:47235609 Bda13g01726 Bda-Chr13:40558652 7.34E-93 wgd
Bda13g01726 Bda-Chr13:40558652 Bda13g01744 Bda-Chr13:40767458 3.72E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16958 PF01486 K-box 3.90E-17 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01726 K09264 - vvi:100232867 255.758