Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01744 ATGGGGAGAGGAAGAGTAGAACTCAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTACGAGCTTTCTGTTCTCTGTGATGCAGAGGTTGCTCTTATTATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAGAACCCTGGAAAGGTACCAAAAATGTAGCTATGGCGCGGTGGAAGTCAACAGACCTTGCAAAGAACTTGAGAGCAGCTACAGAGAGTACTTGAAGTTGAAATCCAGATTTGAGTCCCTACAAAAAACTCAAAGAAATCTGCTTGGGGAAGAATTGGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAACGTCAGCTGGAAGCATCCTTAAAGCAAGTAAGATCCACCAAGACCCAGTTCATGCTCGATCAGCTTTCTGATCTTCAAACCAAGGAACAAATGCTGATGGAAGCCAACAGAGCTTTGTCTATAAAGCTAGATGAAATCAGTTCAAGAAATCAGCTAAGGCCAGCTTGGGAAGGTGGGGATCAAAATATATCATATGGATCTCAAAGTGCCCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATCGGATACAGTGGTGCCGACGAGATGGCTGCAACTGGCGCAGCTCATGGCCAGCAAATCACTGGATTTCTACCTGGATGGATGCTCTGA 732 44.95 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLRTLERYQKCSYGAVEVNRPCKELESSYREYLKLKSRFESLQKTQRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKTQFMLDQLSDLQTKEQMLMEANRALSIKLDEISSRNQLRPAWEGGDQNISYGSQSAQTQGFFQPLDCNPTLQIGYSGADEMAATGAAHGQQITGFLPGWML 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40767458 40774001 + Bda000622.1 Bda13g01744 19875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01744 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g01744 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bda13g01744 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Bda13g01744 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bda13g01744 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Bda13g01744 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g01744 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda13g01744 243 Coils Coil 121 144 - -
Bda13g01744 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00385 Bda-Chr11:4218295 Bda13g01744 Bda-Chr13:40767458 6.85E-103 dispersed
Bda13g00532 Bda-Chr13:6364512 Bda13g01744 Bda-Chr13:40767458 9.88E-105 dispersed
Bda13g01351 Bda-Chr13:35864550 Bda13g01744 Bda-Chr13:40767458 1.35E-07 dispersed
Bda13g01744 Bda-Chr13:40767458 Bda14g00875 Bda-Chr14:6779849 9.27E-61 dispersed
Bda15g00745 Bda-Chr15:10917908 Bda13g01744 Bda-Chr13:40767458 1.92E-43 dispersed
Bda01g01197 Bda-Chr1:47235609 Bda13g01744 Bda-Chr13:40767458 2.50E-168 wgd
Bda13g01726 Bda-Chr13:40558652 Bda13g01744 Bda-Chr13:40767458 3.72E-95 wgd
Bda13g01744 Bda-Chr13:40767458 Bda07g01036 Bda-Chr7:12216706 9.12E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16960 PF01486 K-box 9.50E-27 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01744 K09264 - csv:101208204 409.068