Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01768 ATGCGGATGAGCTGCAATGGTTGCAGGGTGCTGCGCAAAGGATGTAGTGAAAATTGTAGCATTAGACCTTGTTTGCAGTGGATCAAAAGCCACGACTCTCAAGCGAACGCTACAGTATTCCTCGCAAAGTTTTATGGCCGTGCCGGCCTTATGAATCTAATTAACGCCGGCCCTGACCATCTCCGACCTGGTGAGATTTTGAGGTTCCTCATTCGTTTTTTGTTTTCCTCTGCATGCATTTGTGAATTTGCTGGGATTGATGGATTTTGGTGGTTTTCAGCCATTTTTAGGTCTTTGCTGTACGAAGCTTGCGGGAGGATTGTTAATCCAATTTATGGATCCGTCGGGTTGCTGTGGTCTGGGAGCTGGCAACTCTGCCAAGCTGCCGTCGAAGCGGTGCTGAAAGGAGATCCGATTACTCCGATTACTTCAGAAGCTGCGGCGAACTGTGATGGACCGCCGCTTAAGCCCTATGATATCCGGCATGTGTCGAAGGATGTGAACTCCACCGCGTCAGATCGTCTCCGGCGAGGGAAGACTCGCTGCCGGTTGCATCGCTCCGTCGGAAAGCCGAAGCCGAGTAAAGATTCTCGGAAAGGTTCCGTCGTCGATCGAGTGGGCGATTTCTTCCCCGACCAGATGAACAGGTCTACGAGTCACGAGTCCTCTCTCAGTCACCAGTCCGACGCCGCCCCTAACGTGGAGAACGAGAGCAAGGAATCGGAGAGCATCGTCTCCGTCGAGACAGCCGATGCTTCGGCCCCGGCGCTGATCCGATCAGAAACAGATTCCTTTCCTAAGCGGAAGTACGAAGCAATCGAAGAAGGAGACGTCACCCTGGAGCTTACCTTAGGGTTGAAACCTTCGATGTCACGCGCCACGCACGTAGTTCCTATGAAGAAGCGAAAAGTCGACCACTCCCCAACCGGCGCGTGTAAGACAGAGCTGGGCCTTGACTTGCAGGTTTAA 969 52.84 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPDHLRPGEILRFLIRFLFSSACICEFAGIDGFWWFSAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGDPITPITSEAAANCDGPPLKPYDIRHVSKDVNSTASDRLRRGKTRCRLHRSVGKPKPSKDSRKGSVVDRVGDFFPDQMNRSTSHESSLSHQSDAAPNVENESKESESIVSVETADASAPALIRSETDSFPKRKYEAIEEGDVTLELTLGLKPSMSRATHVVPMKKRKVDHSPTGACKTELGLDLQV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40996293 40997261 - Bda000647.1 Bda13g01768 19899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01768 322 MobiDBLite consensus disorder prediction 189 205 - -
Bda13g01768 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 69 - -
Bda13g01768 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 94 319 - -
Bda13g01768 322 ProSiteProfiles LOB domain profile. 3 139 IPR004883 -
Bda13g01768 322 MobiDBLite consensus disorder prediction 212 232 - -
Bda13g01768 322 MobiDBLite consensus disorder prediction 180 259 - -
Bda13g01768 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 69 - -
Bda13g01768 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 94 319 - -
Bda13g01768 322 Pfam Lateral organ boundaries (LOB) domain 4 63 IPR004883 -
Bda13g01768 322 Pfam Lateral organ boundaries (LOB) domain 94 133 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01358 Bda-Chr8:54032646 Bda13g01768 Bda-Chr13:40996293 1.60E-42 dispersed
Bda11g01472 Bda-Chr11:21231420 Bda13g01768 Bda-Chr13:40996293 1.76E-46 dispersed
Bda01g01171 Bda-Chr1:46897207 Bda13g01768 Bda-Chr13:40996293 4.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16964 PF03195 LOB 2.50E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01768 - - fve:101314484 365.54