Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g01800 | ATGGAGCACTTGTTGGGTCTTCTTAAAATTCATGTTTGCAGAGGGGTTAACCTTGCCGTGAGAGATGTAACGACCAGCGACCCTTATGTTGTTCTCAAAATGGGAAAACAGAAACTGAAAACTCGTGTAGTTAGGAAAAACATCAATCCAGAGTGGAACGAAGACTTAACTATGTCTGTTATGGATCCTTCTCTTCCGATTAAACTTTCTGTGTATGACAAAGATACATTTTCACTCGACGACAAAATGGGAGATGCCGAGTTCGAAATCGGGCCGTTCCTCGAAGCCATGAGAATGCGATTGGAAGACCTCCCGAGCGGAACGATTATAAGAAAGATTCAACCGAACAGGCAAAATTGCTTGTCTGAAGAGAGTAGCATTGTTTGGGAAGGACAGAGAGTTGTCCAAAACTTGTTTCTCAGATTGAGAAACGTGGAGTCTGGTGAAGTTCAATTGAAGTTGCAGTGGGTTGACATTCCTGGCTCGAGAGGCTTATGA | 498 | 43.37 | MEHLLGLLKIHVCRGVNLAVRDVTTSDPYVVLKMGKQKLKTRVVRKNINPEWNEDLTMSVMDPSLPIKLSVYDKDTFSLDDKMGDAEFEIGPFLEAMRMRLEDLPSGTIIRKIQPNRQNCLSEESSIVWEGQRVVQNLFLRLRNVESGEVQLKLQWVDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 41824189 | 41825294 | - | Bda000688.1 | Bda13g01800 | 19931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g01800 | 165 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Bda13g01800 | 165 | Pfam | C2 domain | 7 | 94 | IPR000008 | - | |
| Bda13g01800 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE | 1 | 164 | - | - | |
| Bda13g01800 | 165 | PRINTS | C2 domain signature | 22 | 34 | IPR000008 | - | |
| Bda13g01800 | 165 | PRINTS | C2 domain signature | 46 | 59 | IPR000008 | - | |
| Bda13g01800 | 165 | PRINTS | C2 domain signature | 67 | 75 | IPR000008 | - | |
| Bda13g01800 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 112 | IPR035892 | - | |
| Bda13g01800 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Bda13g01800 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
| Bda13g01800 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Bda13g01800 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00773 | Bda-Chr9:14394394 | Bda13g01800 | Bda-Chr13:41824189 | 7.75E-43 | dispersed | |
| Bda11g01784 | Bda-Chr11:52726419 | Bda13g01800 | Bda-Chr13:41824189 | 4.85E-77 | dispersed | |
| Bda13g01800 | Bda-Chr13:41824189 | Bda14g00936 | Bda-Chr14:7438576 | 1.35E-79 | dispersed | |
| Bda14g00438 | Bda-Chr14:3150773 | Bda13g01800 | Bda-Chr13:41824189 | 3.11E-40 | dispersed | |
| Bda01g01150 | Bda-Chr1:46609618 | Bda13g01800 | Bda-Chr13:41824189 | 6.71E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g01800 | - | - | qsu:112031486 | 277.715 |