Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01813 ATGGCGATTTTAAACTCCGAGCCAAATGGGTCATCTACTTCTTACCGATTGGGAGCTTCTGCGAGGTTTAATGGCATCTCGACGCCGTTACACCATCAGTTTCATCATAATCTGAATCAATTTGGCGTTGGACCGTCTGATCAAGGTTCTAATGGGTTGATGAGATCTAGATCTTTGCAAAAATTTCCAGCGAAACGCAGTATGAGAGCTCCTAGGATGAGGTGGACGAGTACTCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGAGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAAACCACTGACAAGCCTGCTGCTTCCTCAGATGGGTCTGGAGAGGATGATATTTCGCCAATGGGTAATTCAAATGACCTTGGCATAAGACAAATTGGAAAAGATCAAGGAGGACCATCCGATCGGTTGGGGCAACAAGATATGGACTATGCTTTCTCCACCCTTTGGTCTAATTCTTCAAGTTGTAGAGAATCTCGGGCACACACTAACTCCAGTGGCATAGAAATGATCAGATCTGCATCTTTCCCATCTCACCAAAAAGCTGGCCACCAACATGAGGAATGTGATTCGGCTCGGAAAATGTACGGAAGGTCAAGTTCGGACTGTAAGAACCCGAGCTTGGAGTTCACATTAGGCAGACCAGATTGGGTTGTAAAGGAAGATGACTGA 765 44.71 MAILNSEPNGSSTSYRLGASARFNGISTPLHHQFHHNLNQFGVGPSDQGSNGLMRSRSLQKFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGEDDISPMGNSNDLGIRQIGKDQGGPSDRLGQQDMDYAFSTLWSNSSSCRESRAHTNSSGIEMIRSASFPSHQKAGHQHEECDSARKMYGRSSSDCKNPSLEFTLGRPDWVVKEDD 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42044070 42047686 + Bda000701.1 Bda13g01813 19944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01813 254 MobiDBLite consensus disorder prediction 126 170 - -
Bda13g01813 254 MobiDBLite consensus disorder prediction 141 155 - -
Bda13g01813 254 MobiDBLite consensus disorder prediction 227 254 - -
Bda13g01813 254 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 71 124 IPR006447 GO:0003677
Bda13g01813 254 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 14 253 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bda13g01813 254 PANTHER TRANSCRIPTION REPRESSOR KAN1 14 253 - -
Bda13g01813 254 Pfam Myb-like DNA-binding domain 72 123 IPR001005 -
Bda13g01813 254 SUPERFAMILY Homeodomain-like 68 124 IPR009057 -
Bda13g01813 254 Gene3D - 70 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01813 - - - vvi:100244905 322.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00856 Bda-Chr6:11789833 Bda13g01813 Bda-Chr13:42044070 4.25E-36 dispersed
Bda09g00611 Bda-Chr9:8857538 Bda13g01813 Bda-Chr13:42044070 3.60E-18 dispersed
Bda13g01813 Bda-Chr13:42044070 Bda07g01170 Bda-Chr7:13944504 4.69E-20 dispersed
Bda01g01484 Bda-Chr1:50748641 Bda13g01813 Bda-Chr13:42044070 1.43E-12 transposed
Bda07g00081 Bda-Chr7:1040335 Bda13g01813 Bda-Chr13:42044070 6.87E-06 transposed
Bda07g01024 Bda-Chr7:12102555 Bda13g01813 Bda-Chr13:42044070 1.60E-21 transposed
Bda01g01128 Bda-Chr1:46166889 Bda13g01813 Bda-Chr13:42044070 2.54E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01813 . . . Bma02g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16970 PF00249 Myb_DNA-binding 2.00E-05 CL0123 Bda TF