Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01823 ATGGTGTGGGCTCTTTCTCCTGCGGATCCTCACTCAGGCGAGGAGAGTTACTACATCTTTGCCCCTGGAAAGTACACTGTGGGTCGTAAAGGCTGTGATATAATTGTTACTAAAGATAAAGGCGTCTCTCGCATTCATGCGGAAATAGTTGTAGATTCTATGATTTACTTAAATCTCCGACAAAGGCAATCATCTCACATGACATCCAAAGTGCGGATTATTGATTGCTCGAAGTATGGTACATATATCACCAAGAAAGTTGCTGTAAAACAGAAAATTCATGATCTTCCCAACAAAGAAACAAGTCTAAATGAGGGGGACTTGGTATCATTTGGAACTGGTTCTGCAAACCACAGGTTTTCTTTTGTGCCACTCATCTTTTACGCTGGTCAATCAGAGCCTTCCAAAGAAAATTATAACATAGTACTATCCAAATTTAATGTAGGTGCTCGAATTTTCTATAATTGGACTCAGGAGGAGTGCACGCATGTGCTTGTTGATGAGCTCATGCCTTTAACAGAAACTCTAGTTAATGCCATTGTGGCGAAGAAACCTATTGTTCTTTCTAGCTGGGTTGAGCATATTGCAGGGAAAAGAATTGGCAACAGTATTCCAAGCTTCGACTCCTTCTTTCCAACTCTGAAGGTGGAAATAAAATCAGTCAAAGTTGCGAACCCAAATTCTCGTGAAAATTGTTTGAGCAAATATTTGTTTTTGTTGGACTCTATAGATAAGTATAAGTATAGAGATCAGTTGCAATCGCTGTTACAGATTTGTGGGGCGAAGAATCTTTCTATTGAAGAGTTTCGTGTACAAAAACGGAATAGATTTTGTGAAGCTAACCTTCAGACTTATGAACGAAGAAAATCATATACGAGTGAGAAGTGTCGATATAGAAAAACCCTCTTTAAAAGGAATGGTATGTATTTGATTTTTTATGCCTTGAGCAAATCAGAAGAGGAGAGTGACTATAGTGATGTTGGATCCATCAACTTTGATAGCCCCATGTGGGAGACAATAATTGTAAAAGCATATACTCTAGTTGATGAAACAGCTAATTCCTCCATTAAAAGACGCAACGAAGATTTGAGCAAACCAGAAATTCCCATAGTTCTTCCTACTTCCACATCAGAGCATAGCATTCTTACAAATTCTACGGAAATTAGAAGAGACAAGATTGACGAGTCTGAAATGGGAAATATAGACATTATATATACTCAAGATTTGATCGTCCGGAATATGACGAATCCATCTCCTGCAGTTATTGACGAAAACAATGGAGTTGTAGATTTCAAACGCTTCAAAAAGACGAAGACTCAATCCGGTAATAGCTTCTACAGTCTTATTCAATTCTCGAAGAATCCATACAGAGAAATCGATCATGGGAGTGACGAGTTGGCTGCCTCGTTGAAAGAAGAGAAAAAACGAAAGCAAATGGAAGCGATTGCTGAAGATTTATTTAACAATGAGAAGCCATTACTCCAGCTGAGTATGCTCCATGCACAGACCCCTGATGGTCCATGCTTACAGCTTCTCCTCCAAAGAAAAGATTTCCCAAAGGTGCTCTAA 1569 38.94 MVWALSPADPHSGEESYYIFAPGKYTVGRKGCDIIVTKDKGVSRIHAEIVVDSMIYLNLRQRQSSHMTSKVRIIDCSKYGTYITKKVAVKQKIHDLPNKETSLNEGDLVSFGTGSANHRFSFVPLIFYAGQSEPSKENYNIVLSKFNVGARIFYNWTQEECTHVLVDELMPLTETLVNAIVAKKPIVLSSWVEHIAGKRIGNSIPSFDSFFPTLKVEIKSVKVANPNSRENCLSKYLFLLDSIDKYKYRDQLQSLLQICGAKNLSIEEFRVQKRNRFCEANLQTYERRKSYTSEKCRYRKTLFKRNGMYLIFYALSKSEEESDYSDVGSINFDSPMWETIIVKAYTLVDETANSSIKRRNEDLSKPEIPIVLPTSTSEHSILTNSTEIRRDKIDESEMGNIDIIYTQDLIVRNMTNPSPAVIDENNGVVDFKRFKKTKTQSGNSFYSLIQFSKNPYREIDHGSDELAASLKEEKKRKQMEAIAEDLFNNEKPLLQLSMLHAQTPDGPCLQLLLQRKDFPKVL 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42169582 42181278 - Bda032827 Bda13g01823 19954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01823 522 CDD FHA 2 122 IPR000253 GO:0005515
Bda13g01823 522 PANTHER NIBRIN-RELATED 2 281 IPR040227 GO:0006302|GO:0007095|GO:0030870
Bda13g01823 522 PANTHER NIBRIN-RELATED 384 491 IPR040227 GO:0006302|GO:0007095|GO:0030870
Bda13g01823 522 Gene3D - 3 122 - -
Bda13g01823 522 ProSiteProfiles Forkhead-associated (FHA) domain profile. 20 88 IPR000253 GO:0005515
Bda13g01823 522 Pfam FHA domain 25 112 IPR000253 GO:0005515
Bda13g01823 522 SUPERFAMILY SMAD/FHA domain 13 127 IPR008984 GO:0005515
Bda13g01823 522 SMART FHA_2 24 88 IPR000253 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01823 K10867 NBN, NBS1; nibrin - csv:101205356 407.912
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01823 Bpe14g00053 . . Bma02g00573 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009214 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34