Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01832 ATGGCATCTTCGTCCAACTCCCCCTGTGCAGCCTGCAAATTTCTCCGCCGGAAATGTCAGCTTGAGTGCGTTTTTGCTCCCTACTTCCCGCCCGACCAACCTCAAAAATTCGCAAACGTACACAAAGTGTTCGGAGCAAGCAATGTCACGAAGCTTCTCAACGAGCTCCACCCCCATCAGCGAGAAGATGCCGTCAATTCTCTCGCCTACGAGGCCGACATGCGCCTCCGAGATCCGGTCTATGGGTGTGTGGGGGTCATCTCCCTCCTTCAGCACCAACTCCGGCAGCTCCAAATCGACCTCAGCTGCGCAAAATCCGAGCTCTCGAAATACCAAAATCTCGGCCTGACCGGGCATGGCCTCATTGCCGCCGCTGCAGCAGCTGCCACTTCCACTCACAACCACCACCACCTGCAGAACCTCGGAATCAACCTGATTGGCTCCGGCAAAGATTATCACCACCACCACCACCAACTTTTCCCTCGCGATCAGGCCCAGCCGATCGGGAGGGGCTTTGACATTGCCGGAAACAGCGTTTACGATGGCGGTCTTCTTGCGATGAATGTTTCTAGTTTGGGCCAACTCAATCAGTTTCAGCAACCGAGGGCTGGAGGCGATGATCACCGCCGAACGATCGATCCCTCTTAG 648 55.86 MASSSNSPCAACKFLRRKCQLECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGLTGHGLIAAAAAAATSTHNHHHLQNLGINLIGSGKDYHHHHHQLFPRDQAQPIGRGFDIAGNSVYDGGLLAMNVSSLGQLNQFQQPRAGGDDHRRTIDPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42352205 42352852 - Bda000723.1 Bda13g01832 19963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01832 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 184 - -
Bda13g01832 215 Coils Coil 87 114 - -
Bda13g01832 215 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Bda13g01832 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Bda13g01832 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01424 Bda-Chr11:18932366 Bda13g01832 Bda-Chr13:42352205 9.81E-53 dispersed
Bda13g01832 Bda-Chr13:42352205 Bda15g00546 Bda-Chr15:8519291 9.24E-58 dispersed
Bda01g01103 Bda-Chr1:45777636 Bda13g01832 Bda-Chr13:42352205 1.32E-148 wgd
Bda13g01832 Bda-Chr13:42352205 Bda07g01123 Bda-Chr7:13134567 1.22E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16972 PF03195 LOB 3.00E-42 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01832 - - jre:109004073 352.058