Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01841 | ATGGATTCGGAGGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGACGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGCGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAGAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCACGATGAATGGTTTGCTGACGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAAACTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAAAGCGTTTTCTTTCCTGATTTTGTCTTTTTGTATTTTTCCTGACCTTCGCTTAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTGACACTGCGATGTCCTGAACCATCTTGTGTTGCTGCTGTTGACCAAGATGCAATTAATATGTTGGCGTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCTTATAGCTTTTGTTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGTACGGCAAAAATGTGAGAGTGCATTATTTCATTAAAATGATATTGAACCAAACAGTGAATTCCTTACATGGGTTCCTTTTTTCACCTTCCAGAGAAAGCTATTGTCACTTGACTCTCGCTTCTCTTCCAAAAAAAAAACAGAGAGATAAAAGAAACAATGTTATCCTCTATTTTTTTTTGTGGTTTAAGGCAGGAGGGAGAGTTAGTCTTGTTAGTGGTTTAAGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCGTGGTCTGATCACGGTGAGCGAACTGGCGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGACGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTACGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTGCAGCTTGAGAAGCTAAGCGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGCCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCATCGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACATGGTGCTTGCAGCCGTGCAGCCAGCTCGAAGATCATGGGAGGCGGCAGTAGCAGGGGTAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGTCGAACAGTGGACAATTCCGATCATTAA | 1974 | 43.16 | MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPEVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKPVVDFSNAKVLACGICFENYPSDRICAASCGHPFCKAFSFLILSFCIFPDLRLGYISTSINGGPGCLTLRCPEPSCVAAVDQDAINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWYGKNVRVHYFIKMILNQTVNSLHGFLFSPSRESYCHLTLASLPKKKQRDKRNNVILYFFLWFKAGGRVSLVSGLRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVQLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASSKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 42525546 | 42534224 | - | Bda000734.1 | Bda13g01841 | 19972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01841 | 657 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Bda13g01841 | 657 | ProSiteProfiles | TRIAD supradomain profile. | 137 | 438 | IPR044066 | - | |
Bda13g01841 | 657 | Gene3D | - | 281 | 611 | - | - | |
Bda13g01841 | 657 | SUPERFAMILY | RING/U-box | 137 | 235 | - | - | |
Bda13g01841 | 657 | Coils | Coil | 446 | 466 | - | - | |
Bda13g01841 | 657 | MobiDBLite | consensus disorder prediction | 636 | 657 | - | - | |
Bda13g01841 | 657 | MobiDBLite | consensus disorder prediction | 621 | 657 | - | - | |
Bda13g01841 | 657 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 344 | IPR031127 | GO:0004842|GO:0016567 | |
Bda13g01841 | 657 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 380 | 621 | - | - | |
Bda13g01841 | 657 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 26 | 344 | - | - | |
Bda13g01841 | 657 | SMART | ibrneu5 | 223 | 285 | IPR002867 | - | |
Bda13g01841 | 657 | SMART | ibrneu5 | 367 | 434 | IPR002867 | - | |
Bda13g01841 | 657 | Pfam | Ariadne domain | 447 | 608 | IPR045840 | - | |
Bda13g01841 | 657 | Pfam | IBR domain, a half RING-finger domain | 383 | 425 | IPR002867 | - | |
Bda13g01841 | 657 | Pfam | IBR domain, a half RING-finger domain | 223 | 285 | IPR002867 | - | |
Bda13g01841 | 657 | SUPERFAMILY | RING/U-box | 376 | 438 | - | - | |
Bda13g01841 | 657 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 233 | IPR013083 | - | |
Bda13g01841 | 657 | SUPERFAMILY | RING/U-box | 224 | 292 | - | - | |
Bda13g01841 | 657 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 380 | 621 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00149 | Bda-Chr8:1419256 | Bda13g01841 | Bda-Chr13:42525546 | 5.46E-118 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01841 | K11968 | - | nnu:104598293 | 669.077 |