Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01841 ATGGATTCGGAGGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGACGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGCGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAGAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCACGATGAATGGTTTGCTGACGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAAACTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAAAGCGTTTTCTTTCCTGATTTTGTCTTTTTGTATTTTTCCTGACCTTCGCTTAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTGACACTGCGATGTCCTGAACCATCTTGTGTTGCTGCTGTTGACCAAGATGCAATTAATATGTTGGCGTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCTTATAGCTTTTGTTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGTACGGCAAAAATGTGAGAGTGCATTATTTCATTAAAATGATATTGAACCAAACAGTGAATTCCTTACATGGGTTCCTTTTTTCACCTTCCAGAGAAAGCTATTGTCACTTGACTCTCGCTTCTCTTCCAAAAAAAAAACAGAGAGATAAAAGAAACAATGTTATCCTCTATTTTTTTTTGTGGTTTAAGGCAGGAGGGAGAGTTAGTCTTGTTAGTGGTTTAAGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCGTGGTCTGATCACGGTGAGCGAACTGGCGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGACGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTACGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTGCAGCTTGAGAAGCTAAGCGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGCCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCATCGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACATGGTGCTTGCAGCCGTGCAGCCAGCTCGAAGATCATGGGAGGCGGCAGTAGCAGGGGTAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGTCGAACAGTGGACAATTCCGATCATTAA 1974 43.16 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPEVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKPVVDFSNAKVLACGICFENYPSDRICAASCGHPFCKAFSFLILSFCIFPDLRLGYISTSINGGPGCLTLRCPEPSCVAAVDQDAINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWYGKNVRVHYFIKMILNQTVNSLHGFLFSPSRESYCHLTLASLPKKKQRDKRNNVILYFFLWFKAGGRVSLVSGLRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVQLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASSKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42525546 42534224 - Bda000734.1 Bda13g01841 19972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01841 657 MobiDBLite consensus disorder prediction 1 35 - -
Bda13g01841 657 ProSiteProfiles TRIAD supradomain profile. 137 438 IPR044066 -
Bda13g01841 657 Gene3D - 281 611 - -
Bda13g01841 657 SUPERFAMILY RING/U-box 137 235 - -
Bda13g01841 657 Coils Coil 446 466 - -
Bda13g01841 657 MobiDBLite consensus disorder prediction 636 657 - -
Bda13g01841 657 MobiDBLite consensus disorder prediction 621 657 - -
Bda13g01841 657 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 344 IPR031127 GO:0004842|GO:0016567
Bda13g01841 657 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 380 621 - -
Bda13g01841 657 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 344 - -
Bda13g01841 657 SMART ibrneu5 223 285 IPR002867 -
Bda13g01841 657 SMART ibrneu5 367 434 IPR002867 -
Bda13g01841 657 Pfam Ariadne domain 447 608 IPR045840 -
Bda13g01841 657 Pfam IBR domain, a half RING-finger domain 383 425 IPR002867 -
Bda13g01841 657 Pfam IBR domain, a half RING-finger domain 223 285 IPR002867 -
Bda13g01841 657 SUPERFAMILY RING/U-box 376 438 - -
Bda13g01841 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 233 IPR013083 -
Bda13g01841 657 SUPERFAMILY RING/U-box 224 292 - -
Bda13g01841 657 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 380 621 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01841 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - nnu:104598293 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00149 Bda-Chr8:1419256 Bda13g01841 Bda-Chr13:42525546 5.46E-118 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00149 . 58 533 ARIADNE family AT1G05890 71.7 2.2e-215 745.3
Bda13g01841 . 9 624 ARIADNE family AT1G05890 55.0 1.3e-202 703.0
Bda13g01841 . 18 628 ARIADNE family AT1G65430 66.9 5.7e-237 817.0
Bda08g00149 . 54 586 ARIADNE family AT1G65430 68.2 5.7e-229 790.4
Bda08g00149 . 54 449 ARIADNE family AT2G31780 56.9 1.3e-140 496.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72