Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01841 ATGGATTCGGAGGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGACGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGCGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAGAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCACGATGAATGGTTTGCTGACGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAAACTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAAAGCGTTTTCTTTCCTGATTTTGTCTTTTTGTATTTTTCCTGACCTTCGCTTAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTGACACTGCGATGTCCTGAACCATCTTGTGTTGCTGCTGTTGACCAAGATGCAATTAATATGTTGGCGTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCTTATAGCTTTTGTTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGTACGGCAAAAATGTGAGAGTGCATTATTTCATTAAAATGATATTGAACCAAACAGTGAATTCCTTACATGGGTTCCTTTTTTCACCTTCCAGAGAAAGCTATTGTCACTTGACTCTCGCTTCTCTTCCAAAAAAAAAACAGAGAGATAAAAGAAACAATGTTATCCTCTATTTTTTTTTGTGGTTTAAGGCAGGAGGGAGAGTTAGTCTTGTTAGTGGTTTAAGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCGTGGTCTGATCACGGTGAGCGAACTGGCGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGACGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTACGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTGCAGCTTGAGAAGCTAAGCGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCTGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGCCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCATCGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACATGGTGCTTGCAGCCGTGCAGCCAGCTCGAAGATCATGGGAGGCGGCAGTAGCAGGGGTAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGTCGAACAGTGGACAATTCCGATCATTAA 1974 43.16 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPEVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKPVVDFSNAKVLACGICFENYPSDRICAASCGHPFCKAFSFLILSFCIFPDLRLGYISTSINGGPGCLTLRCPEPSCVAAVDQDAINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWYGKNVRVHYFIKMILNQTVNSLHGFLFSPSRESYCHLTLASLPKKKQRDKRNNVILYFFLWFKAGGRVSLVSGLRILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVQLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASSKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42525546 42534224 - Bda000734.1 Bda13g01841 19972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01841 657 MobiDBLite consensus disorder prediction 1 35 - -
Bda13g01841 657 ProSiteProfiles TRIAD supradomain profile. 137 438 IPR044066 -
Bda13g01841 657 Gene3D - 281 611 - -
Bda13g01841 657 SUPERFAMILY RING/U-box 137 235 - -
Bda13g01841 657 Coils Coil 446 466 - -
Bda13g01841 657 MobiDBLite consensus disorder prediction 636 657 - -
Bda13g01841 657 MobiDBLite consensus disorder prediction 621 657 - -
Bda13g01841 657 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 344 IPR031127 GO:0004842|GO:0016567
Bda13g01841 657 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 380 621 - -
Bda13g01841 657 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 344 - -
Bda13g01841 657 SMART ibrneu5 223 285 IPR002867 -
Bda13g01841 657 SMART ibrneu5 367 434 IPR002867 -
Bda13g01841 657 Pfam Ariadne domain 447 608 IPR045840 -
Bda13g01841 657 Pfam IBR domain, a half RING-finger domain 383 425 IPR002867 -
Bda13g01841 657 Pfam IBR domain, a half RING-finger domain 223 285 IPR002867 -
Bda13g01841 657 SUPERFAMILY RING/U-box 376 438 - -
Bda13g01841 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 233 IPR013083 -
Bda13g01841 657 SUPERFAMILY RING/U-box 224 292 - -
Bda13g01841 657 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 380 621 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00149 Bda-Chr8:1419256 Bda13g01841 Bda-Chr13:42525546 5.46E-118 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01841 K11968 - nnu:104598293 669.077