Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01843 ATGGGGTCCTGCTTCTCAGCAGAAAGCAAGAGCCCTCCACCTGGTTCGCCCATGAGTCCTTCCCCGAGAGTCAGGAAGAGGAAAAACTCGAAGAATAGACCTTTATCGCGAAACTCTTCGTTCGATTATCAGAGGGAAGAATCACTGCATCGTATTCCGGAAAGGATGTTCTTAAACGGATCAAATGAGGTGGCATCCCTATTTACTCAACAGGGTAAGAAGGGGCCCAATCAGGATGCCATGATTTTTTGGGAGAATTTTGCTTCGAGGTCGGATACATTGTTTTGTGGAGTTTTTGACGGGCATGGTCCATATGGTCATTTTGTTGCAAAAAGAGTGAGAGATTCACTTCCTCTGAAACTCAGTGAACTTTTGGAAGATAATCCAACCAATGAGGACATGCTTAGACGCATCTCTTTAAATACCGAAAACATCGATTCTGAAGATGCATCTTCTGTATTGGCTGATGGAGAAGCCAGAGTCTCCATTGACGGCGATGAAGTGAAGAAGCAGACTGAGATTTTCGATTCTCTGAAGGAATATATTCTTAAGGCTTTTAAAAGCATGGACAGGGAACTGAGAATGCAGCCGAGGATTGATTGCTTCTTTAGCGGCACGACGGCTGTGACTCTGCTCAAACAGGATCAAGATCTGATTATTGGAAACGTGGGGGACTCTAGAGCTGTTCTTGGTACAAGAGATATAGATGATTCACTTGTTGCAGTTCAACTGACTGTGGATCTCAAGCCTAACCTTCCAGAGGAAGCAGAGAGAATCAGAAGGTGCAGAGGTCGAATTTTTGCGCTTCGAGAAGAACCTGAGGTTGCTCGAGTATGGCTTCCCAACAACAACTCCCCTGGCCTTGCCATGGCCCGGGCTTTCGGAGATTTCTGCCTCAAGGATTTTGGCCTCATCGCTGTTCCTGACATTTCTTATCGACGCCTCACCGAGAAAGACGAGTTTGTCGTCTTGGCCACTGATGGAATTTGGGACGTTCTTTCAAACGAAGAGGTAGTAGAAATTGTAGCTTCATCTCCTGCTCGTTCAACTGCAGCTCGAGATCTCGTTGAATCCGCGACCAAGAAATGGAGAAGTGCATTCCCCACATCCAAGGTCGATGATTGTGCCGTTGTCTGTCTCTTTTTCGACCCAAACTCAAATGCCTTCTCGGCCGATTCAAATTCCAAATTTGAAGAAGAGCAAACTTCAATAGACCTTCTCCACCCTGCAATGGAGGATTCGGATCAGACCGAAGAAGAGACTCTAGATTCTTCTGCGCTTGAAGGAGTGGCTCGCGCAGACACAGTGATCAACCTTCCAAGGTTTCCTCCTGGAATCAAGTAG 1344 46.5 MGSCFSAESKSPPPGSPMSPSPRVRKRKNSKNRPLSRNSSFDYQREESLHRIPERMFLNGSNEVASLFTQQGKKGPNQDAMIFWENFASRSDTLFCGVFDGHGPYGHFVAKRVRDSLPLKLSELLEDNPTNEDMLRRISLNTENIDSEDASSVLADGEARVSIDGDEVKKQTEIFDSLKEYILKAFKSMDRELRMQPRIDCFFSGTTAVTLLKQDQDLIIGNVGDSRAVLGTRDIDDSLVAVQLTVDLKPNLPEEAERIRRCRGRIFALREEPEVARVWLPNNNSPGLAMARAFGDFCLKDFGLIAVPDISYRRLTEKDEFVVLATDGIWDVLSNEEVVEIVASSPARSTAARDLVESATKKWRSAFPTSKVDDCAVVCLFFDPNSNAFSADSNSKFEEEQTSIDLLHPAMEDSDQTEEETLDSSALEGVARADTVINLPRFPPGIK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42548903 42551428 - Bda000736.1 Bda13g01843 19974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01843 447 CDD PP2Cc 64 382 IPR001932 -
Bda13g01843 447 PANTHER ALPHABET, ISOFORM E-RELATED 1 406 - -
Bda13g01843 447 Pfam Protein phosphatase 2C 78 361 IPR001932 -
Bda13g01843 447 ProSiteProfiles PPM-type phosphatase domain profile. 64 382 IPR001932 -
Bda13g01843 447 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 406 - -
Bda13g01843 447 SMART PP2C_4 54 380 IPR001932 -
Bda13g01843 447 SUPERFAMILY PP2C-like 58 384 IPR036457 -
Bda13g01843 447 Gene3D - 59 383 IPR036457 -
Bda13g01843 447 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00309 Bda-Chr12:3395056 Bda13g01843 Bda-Chr13:42548903 0 dispersed
Bda12g00426 Bda-Chr12:5185339 Bda13g01843 Bda-Chr13:42548903 4.73E-107 dispersed
Bda13g01843 Bda-Chr13:42548903 Bda15g00908 Bda-Chr15:15019722 3.29E-100 dispersed
Bda01g01090 Bda-Chr1:45656495 Bda13g01843 Bda-Chr13:42548903 0 wgd
Bda13g01843 Bda-Chr13:42548903 Bda07g01141 Bda-Chr7:13531687 1.60E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01843 - - pvy:116141626 612.068