Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g01915 | ATGAGCTTCCAAGATTTTCAGAATCCGAATGCAGGTAGGGCAAAGCCTTCCGCCGCGCACAACCCATCGCAGGCCGTAGCAGCATCCATATTTCAGATCAACACCGCTGTATCCACCTATCGCCGTCTCGTTGATGCAATCGGTACCGTGAAGGATACTCCGGATCACCGGCAAAAACTGTGTGCAACCAGACAGAAAATTCTGCAACTCGTGAAAGATACTTCTGCCAAACTAAAATCATTGACTGAATCCAATCGCGATAGCAATGTTACACCAAACAAGAAAATCGAAGATGCTAAACTCGCCAAAGACTTCCAAACTGTTCTGCAAGAATTTCAGAAAGTTCAACAGCTTGCCTCAGAGCGTGAATCAACTTACGCACCTTCAGGTCCTCCATTGTCATCTTCATCCATTGAAAAATGCTCTGAAGAGAAAACATGTTTCTTCGAAATATTCAGGCAGGAGTTGATCTTGCTGGACAATGAGATTGGTTTCAATGAAGCTGTAATCGATGAGAGGGAACAGGGCATCAGAGACATAGAGGAGCAAATTGGAGAAGCAAATGAAATATTCAGAGACCTTGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGATATTCATTCGAACATCGACTCCTCTGCGGTGGCGACAACTCAAGCTCGAGTCCAGTTGGCAAAGGCTTCCAAAAGCACGAAAACCAGATCGTCATGGGTTAGTTATCTTGGATATTCTTATTCTTTCCCAGAAGCTATACATAGGTCCTTGTTGGTCACTGCATTGCAAAAAGAGATAGAAGCAAAGCTAATGTTATGA | 819 | 44.08 | MSFQDFQNPNAGRAKPSAAHNPSQAVAASIFQINTAVSTYRRLVDAIGTVKDTPDHRQKLCATRQKILQLVKDTSAKLKSLTESNRDSNVTPNKKIEDAKLAKDFQTVLQEFQKVQQLASERESTYAPSGPPLSSSSIEKCSEEKTCFFEIFRQELILLDNEIGFNEAVIDEREQGIRDIEEQIGEANEIFRDLAVLVHEQGVVIDDIHSNIDSSAVATTQARVQLAKASKSTKTRSSWVSYLGYSYSFPEAIHRSLLVTALQKEIEAKLML | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 43552402 | 43554091 | + | Bda000832.3 | Bda13g01915 | 20046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g01915 | 272 | Pfam | Syntaxin-like protein | 27 | 126 | IPR006011 | GO:0016020 | |
| Bda13g01915 | 272 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bda13g01915 | 272 | PANTHER | SYNTAXIN-22-LIKE | 17 | 244 | - | - | |
| Bda13g01915 | 272 | Gene3D | - | 11 | 129 | - | - | |
| Bda13g01915 | 272 | SMART | SynN_4 | 11 | 124 | IPR006011 | GO:0016020 | |
| Bda13g01915 | 272 | PANTHER | SYNTAXIN | 17 | 244 | IPR045242 | - | |
| Bda13g01915 | 272 | Gene3D | - | 171 | 239 | - | - | |
| Bda13g01915 | 272 | CDD | SNARE_Qa | 170 | 228 | - | - | |
| Bda13g01915 | 272 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 167 | 229 | IPR000727 | - | |
| Bda13g01915 | 272 | SUPERFAMILY | t-snare proteins | 19 | 222 | IPR010989 | GO:0016020|GO:0016192 | |
| Bda13g01915 | 272 | SMART | tSNARE_6 | 162 | 229 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01045 | Bda-Chr1:44543749 | Bda13g01915 | Bda-Chr13:43552402 | 3.52E-128 | dispersed | |
| Bda06g01261 | Bda-Chr6:43102901 | Bda13g01915 | Bda-Chr13:43552402 | 1.24E-80 | dispersed | |
| Bda08g00639 | Bda-Chr8:6575545 | Bda13g01915 | Bda-Chr13:43552402 | 8.06E-82 | dispersed | |
| Bda08g01094 | Bda-Chr8:24288912 | Bda13g01915 | Bda-Chr13:43552402 | 1.41E-06 | dispersed | |
| Bda13g01915 | Bda-Chr13:43552402 | Bda06g00929 | Bda-Chr6:25095255 | 1.46E-07 | dispersed | |
| Bda13g01908 | Bda-Chr13:43429316 | Bda13g01915 | Bda-Chr13:43552402 | 7.39E-88 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g01915 | - | K08488 | rcn:112187643 | 325.865 |