Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01915 ATGAGCTTCCAAGATTTTCAGAATCCGAATGCAGGTAGGGCAAAGCCTTCCGCCGCGCACAACCCATCGCAGGCCGTAGCAGCATCCATATTTCAGATCAACACCGCTGTATCCACCTATCGCCGTCTCGTTGATGCAATCGGTACCGTGAAGGATACTCCGGATCACCGGCAAAAACTGTGTGCAACCAGACAGAAAATTCTGCAACTCGTGAAAGATACTTCTGCCAAACTAAAATCATTGACTGAATCCAATCGCGATAGCAATGTTACACCAAACAAGAAAATCGAAGATGCTAAACTCGCCAAAGACTTCCAAACTGTTCTGCAAGAATTTCAGAAAGTTCAACAGCTTGCCTCAGAGCGTGAATCAACTTACGCACCTTCAGGTCCTCCATTGTCATCTTCATCCATTGAAAAATGCTCTGAAGAGAAAACATGTTTCTTCGAAATATTCAGGCAGGAGTTGATCTTGCTGGACAATGAGATTGGTTTCAATGAAGCTGTAATCGATGAGAGGGAACAGGGCATCAGAGACATAGAGGAGCAAATTGGAGAAGCAAATGAAATATTCAGAGACCTTGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGATATTCATTCGAACATCGACTCCTCTGCGGTGGCGACAACTCAAGCTCGAGTCCAGTTGGCAAAGGCTTCCAAAAGCACGAAAACCAGATCGTCATGGGTTAGTTATCTTGGATATTCTTATTCTTTCCCAGAAGCTATACATAGGTCCTTGTTGGTCACTGCATTGCAAAAAGAGATAGAAGCAAAGCTAATGTTATGA 819 44.08 MSFQDFQNPNAGRAKPSAAHNPSQAVAASIFQINTAVSTYRRLVDAIGTVKDTPDHRQKLCATRQKILQLVKDTSAKLKSLTESNRDSNVTPNKKIEDAKLAKDFQTVLQEFQKVQQLASERESTYAPSGPPLSSSSIEKCSEEKTCFFEIFRQELILLDNEIGFNEAVIDEREQGIRDIEEQIGEANEIFRDLAVLVHEQGVVIDDIHSNIDSSAVATTQARVQLAKASKSTKTRSSWVSYLGYSYSFPEAIHRSLLVTALQKEIEAKLML 272
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 43552402 43554091 + Bda000832.3 Bda13g01915 20046
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01915 272 Pfam Syntaxin-like protein 27 126 IPR006011 GO:0016020
Bda13g01915 272 MobiDBLite consensus disorder prediction 1 20 - -
Bda13g01915 272 PANTHER SYNTAXIN-22-LIKE 17 244 - -
Bda13g01915 272 Gene3D - 11 129 - -
Bda13g01915 272 SMART SynN_4 11 124 IPR006011 GO:0016020
Bda13g01915 272 PANTHER SYNTAXIN 17 244 IPR045242 -
Bda13g01915 272 Gene3D - 171 239 - -
Bda13g01915 272 CDD SNARE_Qa 170 228 - -
Bda13g01915 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 167 229 IPR000727 -
Bda13g01915 272 SUPERFAMILY t-snare proteins 19 222 IPR010989 GO:0016020|GO:0016192
Bda13g01915 272 SMART tSNARE_6 162 229 IPR000727 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01045 Bda-Chr1:44543749 Bda13g01915 Bda-Chr13:43552402 3.52E-128 dispersed
Bda06g01261 Bda-Chr6:43102901 Bda13g01915 Bda-Chr13:43552402 1.24E-80 dispersed
Bda08g00639 Bda-Chr8:6575545 Bda13g01915 Bda-Chr13:43552402 8.06E-82 dispersed
Bda08g01094 Bda-Chr8:24288912 Bda13g01915 Bda-Chr13:43552402 1.41E-06 dispersed
Bda13g01915 Bda-Chr13:43552402 Bda06g00929 Bda-Chr6:25095255 1.46E-07 dispersed
Bda13g01908 Bda-Chr13:43429316 Bda13g01915 Bda-Chr13:43552402 7.39E-88 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01915 - K08488 rcn:112187643 325.865