Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00053 ATGATTCCTGCTGACTGGATTTTCTTACTATTTCTCTCGAACTGTCTTTGTTCTTCAGCCATGGCTGCCCTCAATCTCACCATTCCTCATCAGCACCCTCACCCAGATTTGGTTGCTATGCAAGTTCAAAGAACAATCAATGAATCTGTATGGCGAAGACAAATACTTTCACTTCAAGAAAAAGATCAAACTTACCAGTGTCTCACCGGAAACCCAATCGACGATTGCTGGCGATGCGACTCCAACTGGGAGACGAATCGGCAAAGGCTCGCCGACTGCGGAATCGGATTCGGAAGAGACGCCATGGGGGGCAAGGGCGGCCAATTCTACATTGTCACGGACTCCTCCGATAAGGACCCGGCCAACCCCACCCCCGGCACCCTCCGGCACGCCGTGATCCAAGTGGAACCCCTCTGGATTATCTTCTCCAGAGACATGACTATAAAACTCAAACACGAACTCATCGTAAGCAGTTTCAAAACCATCGATGGCCGGGGAGCGAAAGTCCAGATAACCGGCGGCGGCTGCATTACTCTTCAGTTCATCTCGAACGTAATAATCCACAGCGTCTTCATCCACCATTGCGTACCCACCGGGAATTCAAACATTCGATCGAGTCCAACACACGTCGGGCACCGTGGCAGATCGGACGGCGACGGAATCTCAATCTACAGCTCGAGAAATATCTGGATCGATCATTGCTCCCTCTCGTACTGTACGGACGGACTTATAGACGCTATAATGGGGTCGACCGGAATCACCATCTCGAACAGCTATTTCTCACACCATAACGAGGTGATGCTTCTGGGGCACAACGATGGGCATGTACCAGACTCCGGTATGCAGGTGACCATCGCCTTCAACCACTTCGGCGAGGCGCTGGTGCAGCGTATGCCCAGGTGTAGACGCGGGTACATACACGTGGTCAACAATGATTTCACGGCGTGGGAGATGTACGCCATAGGAGGTAGTGCCAGTCCCACCATTAACAGCCAAGGGAATCGATACACCGCTCCGCTCGACCCTTACGCCAAGGAGGTGACTAAGCGGGTGGATACAGACGAGAGAGAGTGGAGCGATTGGAACTGGAGGACGGAGGGGGACATAATGGTGAACGGAGCGTTCTTCGTGCCATCAGGACAAGGCCTGAGCCCTCAGTTCACCAAAGCCTCCAGCGTGGAGCCCAAGTCCGTCGCTCTCATCGACCAACTCACCCTCTACTCCGGCGTGCTTGAAAACCCAGGGGACGGTGGTCAAAGCATAATATATCCAGGGTTCGACAGCACCACCAGTAGTAGCGGCTCAACCACTCCAAAACCGGGATCAAACGGCGGAGAAGACGACTATTTTGGAATGATATTCGGAGATCATTTTTCAAGCAGCTCCTCACCTCTCCGACCATTTCTTAGCTTATTAGTTCTTCCAAGTATATGGGTTATTATTTATTTGGGTTTTTACACAAGTGGATGTGTAATTAATTCATTGAGTATTTAA 1494 51.27 MIPADWIFLLFLSNCLCSSAMAALNLTIPHQHPHPDLVAMQVQRTINESVWRRQILSLQEKDQTYQCLTGNPIDDCWRCDSNWETNRQRLADCGIGFGRDAMGGKGGQFYIVTDSSDKDPANPTPGTLRHAVIQVEPLWIIFSRDMTIKLKHELIVSSFKTIDGRGAKVQITGGGCITLQFISNVIIHSVFIHHCVPTGNSNIRSSPTHVGHRGRSDGDGISIYSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHNEVMLLGHNDGHVPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRYTAPLDPYAKEVTKRVDTDEREWSDWNWRTEGDIMVNGAFFVPSGQGLSPQFTKASSVEPKSVALIDQLTLYSGVLENPGDGGQSIIYPGFDSTTSSSGSTTPKPGSNGGEDDYFGMIFGDHFSSSSSPLRPFLSLLVLPSIWVIIYLGFYTSGCVINSLSI 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 450586 452422 + Bda026785.1 Bda14g00053 20104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00053 497 Pfam Pectate lyase 151 334 IPR002022 -
Bda14g00053 497 SUPERFAMILY Pectin lyase-like 61 389 IPR011050 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bda14g00053 497 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bda14g00053 497 PANTHER PECTATE LYASE 10 417 - -
Bda14g00053 497 MobiDBLite consensus disorder prediction 423 442 - -
Bda14g00053 497 Gene3D - 70 412 IPR012334 -
Bda14g00053 497 SMART amb_all 145 342 IPR002022 -
Bda14g00053 497 PANTHER PECTATE LYASE 18-RELATED 10 417 IPR045032 GO:0030570
Bda14g00053 497 MobiDBLite consensus disorder prediction 422 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00767 Bda-Chr3:6430415 Bda14g00053 Bda-Chr14:450586 9.54E-43 dispersed
Bda14g00053 Bda-Chr14:450586 Bda14g00785 Bda-Chr14:6062290 1.34E-172 dispersed
Bda14g00053 Bda-Chr14:450586 Bda14g00368 Bda-Chr14:2672466 0 wgd
Bda14g00053 Bda-Chr14:450586 Bda15g00151 Bda-Chr15:4087033 0 wgd
Bda14g00053 Bda-Chr14:450586 Bda03g00722 Bda-Chr3:6094621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00053 K01728 - csv:101205739 713.375