Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00079 ATGGGAAAGGAGAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCCACCACCACTGGGCACTTGATTTACAAGCTCGGTGGTATCGACAAGCGTGTCATTGAGAGATTTGAGAAAGAAGCTGCAGAGATGAACAAGCGATCATTTAAGTATGCTTGGGTGTTGGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATTGATATTGCCTTGTGGAAGTTCGAAACCACAAAATACTATTGCACTGTTATTGATGCCCCTGGACATCGTGATTTTATCAAAAACATGATTACTGGAACTTCCCAAGCTGATTGTGCTGTCCTTATCATTGATTCAACAACTGGAGGGTTCGAAGCAGGTATTTCAAAGGATGGTCAAACTCGTGAGCATGCTCTTCTTGCCTTCACCCTTGGAGTAAGGCAAATGATATGCTGCTGCAACAAGATGGACGCCACAACTCCCAAATATTCTAAGGCAAGGTATGACGAAATTGTGAAGGAAGTGTCCTCCTACATGAAGAAGGTTGGTTATAACCCTGATAAAATTCCCTTCGTCCCCATCTCTGGGTTTGAAGTTGAAATGCACCATGAGGCTCTGCAAGAAGCTCTTCCAGGGGATAACGTTGGTTTCAACGTTAAGAATGTTGCAGTGAAGGATCTCAAGCGTGGTTTTGTTGCCTCTAATTCTAAGGATGATCCTGCTAGAGAAGCAGCCAACTTCACCTCCCAAGTTATTATCATGAACCACCCTGGCCAAATTGGAAATGGTTATGCACCTGTTCTCGATTGTCACACCTGCCACATTGCTGTCAAATTTGCAGAGATATTAACCAAGATAGACAGGAGATCTGGACTTGAGCAAAGAGTAAACGAGATAGAACAATTTTACTCGACTATGAATGTAAAGCAACCTAATGCATCTAAAAGTAGCTCAGTAGTCAAAGACAAGGATAAGGAGAGGCATGTACCGAGTCTCAAAAAGCAGCAGCAGGATGCAACACGTAGGGAAGCAGCTGCTGCAAAGAGAATGCTGGAGCTCATGCGCCAATTTGGCACCATATTGCGCCAGTACTTTACAACTGCATTTGATTTTCATCATTCTTTGATGTTGATTGATTGTCTCGCCTGTAAGATTACCCAGCACAAGTGGGCTTGGCCCTTTATGCAACCTGTAGATGTGGAAGGTCTTGAACTACATGATTATTACGAGGTTATTGATAAGCCAATGGATTTCAGTACCATAAAAAATCAAATGGAGGCTAAGGATGGTACTGGATATAAGAACGTTCGAGAAATATGTTCTGATGTGAGACTAGTTTTTAAGAATGCAATGAAATATAATGATGATAGAAGTGATGTGCATGTCATGGCAAAAACTTTAATGGCAAAGTTTGAGGAAAAGTGGCTGCAACTCCTACCCAAAGTCACTGAAGAGGAAAAACGAAGAGAAGATGAAGAAGCGGAGGCACAAATGGATATGCAGCTTGCACAGGAAGCTGCTCATGCGAGGATGGCTCGAGACATTAGTAATGAACTCTATGAGGTTGATATGCAGTTGGAAGAACTACGGGAAATGGTTGTTCGAAAGTGCAGAAAATTATCAACTGAAGAGAAGAGAACACTAGGAATAGCACTCACCAAACTGTCCCCAGAAGATCTGAGCAAAGTATTGGAGATAGTTGCCCAAAATAACCCGAGTTTCCAAGCGGCGGCCGAAGAGGTGGATCTTGACATTGATGCTCAGAGTGAAACTACCCTTTGGAGATTGAAGTTTTTTGTGAAGGAGGCTTTAGAAATTCAAGGCAAGAGCGCAGTAAGCACTGGTGGGAACAGTAACCAAACTACTTTGAACAATTTTAAAAATGGCGCCAACGCGACCACGGCGACGACCACAAATAACAACAATCATAACAAACGGAGAAAGGAAATATGCGATGCTGTTGCCAGAACTGTCAATAAAAAGGCTAAAAAACTCTCTGCTTGA 2001 42.98 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEILTKIDRRSGLEQRVNEIEQFYSTMNVKQPNASKSSSVVKDKDKERHVPSLKKQQQDATRREAAAAKRMLELMRQFGTILRQYFTTAFDFHHSLMLIDCLACKITQHKWAWPFMQPVDVEGLELHDYYEVIDKPMDFSTIKNQMEAKDGTGYKNVREICSDVRLVFKNAMKYNDDRSDVHVMAKTLMAKFEEKWLQLLPKVTEEEKRREDEEAEAQMDMQLAQEAAHARMARDISNELYEVDMQLEELREMVVRKCRKLSTEEKRTLGIALTKLSPEDLSKVLEIVAQNNPSFQAAAEEVDLDIDAQSETTLWRLKFFVKEALEIQGKSAVSTGGNSNQTTLNNFKNGANATTATTTNNNNHNKRRKEICDAVARTVNKKAKKLSA 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 613788 623300 - Bda026812.2 Bda14g00079 20130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00079 666 PRINTS Bromodomain signature 441 460 IPR001487 GO:0005515
Bda14g00079 666 PRINTS Bromodomain signature 388 401 IPR001487 GO:0005515
Bda14g00079 666 PRINTS Bromodomain signature 404 420 IPR001487 GO:0005515
Bda14g00079 666 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 243 290 IPR009001 -
Bda14g00079 666 ProSiteProfiles Bromodomain profile. 385 460 IPR001487 GO:0005515
Bda14g00079 666 Pfam Elongation factor Tu C-terminal domain 240 291 IPR004160 -
Bda14g00079 666 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 MobiDBLite consensus disorder prediction 317 340 - -
Bda14g00079 666 PANTHER ELONGATION FACTOR 1-ALPHA 1 1 196 - -
Bda14g00079 666 PANTHER ELONGATION FACTOR 1-ALPHA 1 198 290 - -
Bda14g00079 666 SUPERFAMILY Translation proteins 197 239 IPR009000 -
Bda14g00079 666 Gene3D - 533 608 IPR038336 -
Bda14g00079 666 Gene3D Translation factors 241 327 - -
Bda14g00079 666 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 218 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 Gene3D - 330 504 IPR036427 GO:0005515
Bda14g00079 666 MobiDBLite consensus disorder prediction 609 646 - -
Bda14g00079 666 Pfam Elongation factor Tu GTP binding domain 6 201 IPR000795 GO:0003924|GO:0005525
Bda14g00079 666 CDD EF1_alpha 9 197 - -
Bda14g00079 666 MobiDBLite consensus disorder prediction 309 340 - -
Bda14g00079 666 ProSiteProfiles NET domain profile. 529 610 IPR027353 -
Bda14g00079 666 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda14g00079 666 Pfam Bromodomain extra-terminal - transcription regulation 538 601 IPR027353 -
Bda14g00079 666 Gene3D - 1 213 IPR027417 -
Bda14g00079 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 197 IPR027417 -
Bda14g00079 666 MobiDBLite consensus disorder prediction 609 640 - -
Bda14g00079 666 Pfam Bromodomain 383 464 IPR001487 GO:0005515
Bda14g00079 666 SUPERFAMILY Bromodomain 383 484 IPR036427 GO:0005515
Bda14g00079 666 SMART bromo_6 364 479 IPR001487 GO:0005515
Bda14g00079 666 PANTHER TRANSLATION FACTOR 1 196 - -
Bda14g00079 666 PANTHER TRANSLATION FACTOR 198 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00079 Bda-Chr14:613788 Bda11g01796 Bda-Chr11:52978885 2.87E-53 dispersed
Bda13g01636 Bda-Chr13:39838990 Bda14g00079 Bda-Chr14:613788 7.60E-13 transposed
Bda14g00079 Bda-Chr14:613788 Bda15g00380 Bda-Chr15:6732927 1.70E-56 wgd
Bda14g00079 Bda-Chr14:613788 Bda02g00774 Bda-Chr2:48458204 1.60E-57 wgd
Bda14g00079 Bda-Chr14:613788 Bda09g01471 Bda-Chr9:46517877 6.44E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00079 - - csv:101212878 548.51