Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda14g00139 | ATGAGTTTTGTTTTTCGTGGAACAAGAGCTCCAGATATTGAAAGTGGTTTATCTGGGTATACCTCAGAGCGGCGTGCCTTGCGTGTTCACAATGGACGTCCTGTTAATTCCAACTCCCTTGCTTTTCTTGTCACAGTTCTGTTGCTATTCATGATACTTAACTCACATCAGATGTCTCCCAACTTTCTGCTTTGGCTTGTACTTGGTGTCTTTCTGATGGCCACCACCTTGAGAATGTATGCCACTTGTCAACAACTTCAAGCTCAGGCCCAAGCTCATGCTATGGCAGCCAGTGGCATTCTTGGTCACACTGAACTGCGGTTGCATATGCCACATTCTATTGCACTTGCAACGAGGGGGCGTTTGCAGGGCCTTAGACTTCAGCTTGCAGTACTTGACAGGGAATTTGATGATTTAGATTATGAAACCTTGAGAGCATTGGATTCCGACAATGCTCCATCAGCTCTATCAATGAGCGAAGAAGAAATAAACACTCTTCCAGTTCACCAGTACAAGATTGCTGGTTCTCAAAATGGAAATTCATTGGTTCAACAAGGCTCGTCTTCTACATCTGTTGAGGAAAAACAAGACTCTACTAATCCAGTGGGTTGTACAAATGGCTCAGAGGATGAACTAACCTGCAGTGTTTGCTTGGAGCAAGTTAACGTTGGAGAACTCATTCGTAGTTTGCCATGCATGCATCAGTTCCATGTTACTTGCATTGATCCGTGGTTGCGGCAACAAGGGACATGCCCGGTCTGTAAGTTTAGGGCGGGGTCTGGATGGCATGAACAAGGCGAAAATGATTCTTCTTTCATGGTCTGA | 825 | 45.09 | MSFVFRGTRAPDIESGLSGYTSERRALRVHNGRPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAMAASGILGHTELRLHMPHSIALATRGRLQGLRLQLAVLDREFDDLDYETLRALDSDNAPSALSMSEEEINTLPVHQYKIAGSQNGNSLVQQGSSSTSVEEKQDSTNPVGCTNGSEDELTCSVCLEQVNVGELIRSLPCMHQFHVTCIDPWLRQQGTCPVCKFRAGSGWHEQGENDSSFMV | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 967873 | 970228 | - | Bda026872.1 | Bda14g00139 | 20190 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda14g00139 | 274 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
| Bda14g00139 | 274 | MobiDBLite | consensus disorder prediction | 179 | 204 | - | - | |
| Bda14g00139 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
| Bda14g00139 | 274 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SDIR1 | 1 | 273 | - | - | |
| Bda14g00139 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 260 | IPR013083 | - | |
| Bda14g00139 | 274 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 273 | - | - | |
| Bda14g00139 | 274 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
| Bda14g00139 | 274 | SUPERFAMILY | RING/U-box | 209 | 258 | - | - | |
| Bda14g00139 | 274 | SMART | ring_2 | 214 | 254 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g00139 | Bda-Chr14:967873 | Bda11g01819 | Bda-Chr11:53376368 | 8.98E-13 | dispersed | |
| Bda14g00139 | Bda-Chr14:967873 | Bda01g00979 | Bda-Chr1:43419273 | 5.08E-12 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda14g00139 | K16283 | - | csv:101216306 | 427.943 |