Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00175 ATGTGCGGTGATTTGAGTATTAAACTTGGTTCTTTAAATTTTATCATGGAGAATGAAATTCAGAAGCAAAACAAGAGAATTTTCTCTGGTGGTTCGATTTTACTTGAATTAGCAGCCTCCGACGATCTTGATGCCTTCAGGAGAGAAGTTGAAGAGAAAGGCCTGGATATCAATGAGGTGGCCTCTTGGTATGGCAGGAAAATTGGGTCGAGAAAGATGGGTTTCGAGGAAAGGACCCCACTTTTAATTGCAGCCATGTTTGCAAGTGCAAAGATCATGGAGTACATAATCGAAACTGGCAAGGTCGATGTTAATAGGGCTTATGGTTCAGATAAGGCCACTGCCCTCCATTGTGCTGCTTCTGGTGGATCAAGCGATTCAACAGAGGTTATGAAACTCTTACTTGATGCCTCTGCTGATGTCAATTGTGTTGATTCTAACGGCAACAAGCCTGTTGATTTGATCGCCCGGGCTACGAAATTGCTTCCCAATTCAAGGAGAAAGGCAATAGAGATGTTGCTTAACGGTTATTACTTGAGTGGTGAAGGTGCTCGAAGCATTGAGCAAATTGAAAACCAGCAAAAACTCACAGGGTCGATGGTAGTAAAAGATGGGATTGAGAAGAAAGAATATCCTCTTGATGTTTCCTTGCCTGACATAAACATTGGGATATATGGAACTGACGAGTTTAGAATGTATATTTTTAAGGTGAAACCGTGCTCCAGGGCCTACACCCACGATTGGACCGAATGCCCTTTTGCACATCCAGGCGAGAATGCTAGGCGACGGGATCCTAAAAAATATCCCTATAGCTGTGTCCCATGCCCTGAGTTCCGAAAAGGGGCTTGCCAAAAGGGTGATGCCTGTGAATATGCACATGGAGTCTTTGAATCATGGCTTCACCCTGCTCAATACAGGACCAGGCTTTGCAAGGACGAGATCGGATGTGCAAGGAAGGTGTGCTTTTTCGCCCACAAACCTGAAGAATTACGACCCGTCTATGCCTCCACTGGCTCGGCCTTGCCATCACCTCGCTCACACTCTGTCAGCGGCTCAGAAATGGAGGCTTTGAGTCCATTAACTCTTGGTTCTTCGACTTTATCTTTGTCTGTTCCGGCTACATCAACACCGCCCATGTCTCCTTTGGCATCTGTATCATCTCCCATGAGTGGGAGTTTGTGGCAAAACAAAGTCAGCCTCACACCTCCTACTTTGCAGTTGCCGGGTAGTAGACTGAAGGCTTCTTCTAGTGCTAGAGATTTAGATTTCGAAATGGAATTGCTCGGCTTGGAAAATCGAACCAAGCAACAACAACAATATCAGCATTTAGTGGATGAGATATCTCGTCTCTCCTCTCCATCTTATTGGAACAATGATTATAGGAGTGGAGAATTGAAACAGATCAACTATGGTGATATTTTGGGATCTTTAGATTCTCCAATGTTGTCTCAGTTTCAGGGTCTCTCACAAAAACTATCAACGCCAACTCAATTGCAAACAAGGCCTCAAACAAGCCAAGGAATGAATCAACTTCGTTCAAGTTACCCAGCCAAGCTCTCCTCTTCACCAGCAAGGAAACCTTCACCATTCGGGCTCGACTCATCGGCTGCAGTGGCATCTGCAGTTATCAACTCCAGGCCATCCGCCTTTGCGAAGCGGAGCCAGAGTTTCATCGATCGTGCCGCTCCAGCCCAAGTTTCCAGCCATACAGCCTCTTCAAATCTGTCATCATGGGGCTCCCCAGATGGGAAATTAGATTGGAGTGTTCAAGGAGATGATCTAAAAAAGCTGCACAAGTCAGCTTCCTTCGGGTTCAGAACTAGAGCCCCTGGCCCGCCATCTGCCCTTGATGAGCCAGATGTGTCCTGGGTTAACTCATTGGTTAAGGATGTTCCTTCGGAGAAATCAGGGTTGTTTTATGCCGATAAGTCAGCTCACAGTCTCGAGAAGAAGTCACGCGAGTTTCTTCCATCTTGGGTGGAGCAGCTATACATAGAACAGGAGCAGATGGTGGCATAG 2019 46.11 MCGDLSIKLGSLNFIMENEIQKQNKRIFSGGSILLELAASDDLDAFRREVEEKGLDINEVASWYGRKIGSRKMGFEERTPLLIAAMFASAKIMEYIIETGKVDVNRAYGSDKATALHCAASGGSSDSTEVMKLLLDASADVNCVDSNGNKPVDLIARATKLLPNSRRKAIEMLLNGYYLSGEGARSIEQIENQQKLTGSMVVKDGIEKKEYPLDVSLPDINIGIYGTDEFRMYIFKVKPCSRAYTHDWTECPFAHPGENARRRDPKKYPYSCVPCPEFRKGACQKGDACEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSALPSPRSHSVSGSEMEALSPLTLGSSTLSLSVPATSTPPMSPLASVSSPMSGSLWQNKVSLTPPTLQLPGSRLKASSSARDLDFEMELLGLENRTKQQQQYQHLVDEISRLSSPSYWNNDYRSGELKQINYGDILGSLDSPMLSQFQGLSQKLSTPTQLQTRPQTSQGMNQLRSSYPAKLSSSPARKPSPFGLDSSAAVASAVINSRPSAFAKRSQSFIDRAAPAQVSSHTASSNLSSWGSPDGKLDWSVQGDDLKKLHKSASFGFRTRAPGPPSALDEPDVSWVNSLVKDVPSEKSGLFYADKSAHSLEKKSREFLPSWVEQLYIEQEQMVA 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1218809 1220827 + Bda026909.1 Bda14g00175 20226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00175 672 Gene3D - 270 332 - -
Bda14g00175 672 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Bda14g00175 672 SMART ANK_2a 76 106 IPR002110 GO:0005515
Bda14g00175 672 SMART ANK_2a 111 143 IPR002110 GO:0005515
Bda14g00175 672 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 671 - -
Bda14g00175 672 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Bda14g00175 672 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Bda14g00175 672 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Bda14g00175 672 SUPERFAMILY Ankyrin repeat 29 154 IPR036770 -
Bda14g00175 672 MobiDBLite consensus disorder prediction 489 530 - -
Bda14g00175 672 Pfam Ankyrin repeats (3 copies) 69 144 IPR002110 GO:0005515
Bda14g00175 672 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Bda14g00175 672 PANTHER UNKEMPT FAMILY MEMBER 18 671 IPR045234 -
Bda14g00175 672 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Bda14g00175 672 MobiDBLite consensus disorder prediction 489 521 - -
Bda14g00175 672 Gene3D - 15 174 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00153 Bda-Chr12:1353204 Bda14g00175 Bda-Chr14:1218809 6.59E-148 dispersed
Bda14g00175 Bda-Chr14:1218809 Bda14g00247 Bda-Chr14:1738302 0 wgd
Bda14g00175 Bda-Chr14:1218809 Bda09g01538 Bda-Chr9:47033603 4.56E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16991 PF12796 Ank_2 1.60E-07 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00175 - - jre:109007162 869.381