Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00236 ATGGGTGGAAATTCACCGTGTGCCTCCTGCAAGCTTTTGAGAAGACGATGTGCAAAGGAATGCATCTTCGCCCCTTATTTTCCCTCTGATGATCCTCATAAGTTTGCCATTGTTCACAAGGTTTTCGGAGCCAGCAACATCAGCAAAATGTTGCAGGAGCTTCCAACTCATCAGCGAGCAGATGCAGTGAGCAGTCTGGTTTATGAAGCTAATGCAAGAATGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTATCTTCAAAGCCAGGTTTCTCAGCTTCAAATGGAACTTGCCGTGGCTCAGGCGGAGATTCTATGCATCCAAATGCAACAAGAGCCAATGGCTGTGTTGCCAAGTACGTCGCCATTAAACCCAGATGACAAGTCTTATAATTTTCTCCCAAATAATCTCCCCCAGTACCTCAATTTTGCCTGCCTCCACTAA 450 46.22 MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPTHQRADAVSSLVYEANARMRDPVYGCVGAISYLQSQVSQLQMELAVAQAEILCIQMQQEPMAVLPSTSPLNPDDKSYNFLPNNLPQYLNFACLH 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1600223 1600830 - Bda026971.1 Bda14g00236 20287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00236 149 Coils Coil 85 105 - -
Bda14g00236 149 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 146 - -
Bda14g00236 149 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bda14g00236 149 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 146 - -
Bda14g00236 149 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00619 Bda-Chr7:7551742 Bda14g00236 Bda-Chr14:1600223 2.44E-48 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda14g00236 Bda-Chr14:1600223 1.75E-61 dispersed
Bda14g00213 Bda-Chr14:1466564 Bda14g00236 Bda-Chr14:1600223 2.56E-46 dispersed
Bda14g00236 Bda-Chr14:1600223 Bda14g00338 Bda-Chr14:2427324 2.45E-48 dispersed
Bda14g00236 Bda-Chr14:1600223 Bda15g00282 Bda-Chr15:5610058 7.26E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17000 PF03195 LOB 7.10E-43 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00236 - - qsu:112026683 249.21