Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda14g00275 | ATGGAAGCCATACCTCAATCCAACGTCATTCCGGTGGAAGAAGGGTCCCCTCAGAGATCTGTCATCGTCTCCGGCACCGGTGACGTTTCAGGTAATATGGAACACAGGCGTTCGAGGGAGATCGAGATCGAGATTGTTGGAGGGGTGCTGGACAAGGGGAGGGGATCTTCTGCGTCGGAGTGTTCAGTGGAGGTGGATCCGGATCTCGATCGGCCAGTGCCGGAGACCAGGTTGCATTTGGGAAAAGTGGAGAGGGATTGTAGGATTTGCCATCTGAGTTTAAATGCAAGCAACCCTGAATCTGGAATTCCAATGGAATTGGGGTGCTCTTGTAAGAATGATTTAGCTGCTGCCCACAAACACTGTGCGGAGGCTTGGTTCAAAATCAAGGGTAACAAAATCTGTGAAATCTGTGGTTCGATTGCCAGGAATGTGCCGGAAGCTAATGCACCAGACTTGACACTGCATCAGAACGTTGCAAACGAAAATGCAACAATGGTGGCCGTGGCTCCTGCAGGACAGGTCCGGCGCTTCTGGCATGGCCATAGGTTCCTGAATATTCTCCTAGCCACCATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTTCCCTCGTGA | 627 | 51.83 | MEAIPQSNVIPVEEGSPQRSVIVSGTGDVSGNMEHRRSREIEIEIVGGVLDKGRGSSASECSVEVDPDLDRPVPETRLHLGKVERDCRICHLSLNASNPESGIPMELGCSCKNDLAAAHKHCAEAWFKIKGNKICEICGSIARNVPEANAPDLTLHQNVANENATMVAVAPAGQVRRFWHGHRFLNILLATMVFAFVISWLFHFNVPS | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 1858375 | 1859495 | + | Bda027011.1 | Bda14g00275 | 20326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda14g00275 | 208 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 79 | 145 | IPR011016 | GO:0008270 | |
Bda14g00275 | 208 | Pfam | RING-variant domain | 87 | 138 | IPR011016 | GO:0008270 | |
Bda14g00275 | 208 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 147 | IPR013083 | - | |
Bda14g00275 | 208 | PANTHER | ZINC FINGER, RING-CH-TYPE | 34 | 208 | - | - | |
Bda14g00275 | 208 | SUPERFAMILY | RING/U-box | 84 | 141 | - | - | |
Bda14g00275 | 208 | SMART | ringv_2 | 86 | 139 | IPR011016 | GO:0008270 | |
Bda14g00275 | 208 | CDD | RING_CH-C4HC3_MARCH | 87 | 139 | - | - | |
Bda14g00275 | 208 | PANTHER | OS01G0850200 PROTEIN | 34 | 208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda14g00275 | Bda-Chr14:1858375 | Bda06g00296 | Bda-Chr6:4954067 | 1.01E-16 | dispersed | |
Bda10g00414 | Bda-Chr10:36376864 | Bda14g00275 | Bda-Chr14:1858375 | 7.42E-11 | transposed | |
Bda14g00275 | Bda-Chr14:1858375 | Bda15g00243 | Bda-Chr15:5071312 | 5.00E-104 | wgd | |
Bda14g00275 | Bda-Chr14:1858375 | Bda03g01381 | Bda-Chr3:50097905 | 3.30E-55 | wgd | |
Bda14g00275 | Bda-Chr14:1858375 | Bda05g00947 | Bda-Chr5:57993974 | 6.49E-60 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda14g00275 | - | - | jre:108991946 | 236.884 |