Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00275 ATGGAAGCCATACCTCAATCCAACGTCATTCCGGTGGAAGAAGGGTCCCCTCAGAGATCTGTCATCGTCTCCGGCACCGGTGACGTTTCAGGTAATATGGAACACAGGCGTTCGAGGGAGATCGAGATCGAGATTGTTGGAGGGGTGCTGGACAAGGGGAGGGGATCTTCTGCGTCGGAGTGTTCAGTGGAGGTGGATCCGGATCTCGATCGGCCAGTGCCGGAGACCAGGTTGCATTTGGGAAAAGTGGAGAGGGATTGTAGGATTTGCCATCTGAGTTTAAATGCAAGCAACCCTGAATCTGGAATTCCAATGGAATTGGGGTGCTCTTGTAAGAATGATTTAGCTGCTGCCCACAAACACTGTGCGGAGGCTTGGTTCAAAATCAAGGGTAACAAAATCTGTGAAATCTGTGGTTCGATTGCCAGGAATGTGCCGGAAGCTAATGCACCAGACTTGACACTGCATCAGAACGTTGCAAACGAAAATGCAACAATGGTGGCCGTGGCTCCTGCAGGACAGGTCCGGCGCTTCTGGCATGGCCATAGGTTCCTGAATATTCTCCTAGCCACCATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTTCCCTCGTGA 627 51.83 MEAIPQSNVIPVEEGSPQRSVIVSGTGDVSGNMEHRRSREIEIEIVGGVLDKGRGSSASECSVEVDPDLDRPVPETRLHLGKVERDCRICHLSLNASNPESGIPMELGCSCKNDLAAAHKHCAEAWFKIKGNKICEICGSIARNVPEANAPDLTLHQNVANENATMVAVAPAGQVRRFWHGHRFLNILLATMVFAFVISWLFHFNVPS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1858375 1859495 + Bda027011.1 Bda14g00275 20326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00275 208 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Bda14g00275 208 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
Bda14g00275 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 147 IPR013083 -
Bda14g00275 208 PANTHER ZINC FINGER, RING-CH-TYPE 34 208 - -
Bda14g00275 208 SUPERFAMILY RING/U-box 84 141 - -
Bda14g00275 208 SMART ringv_2 86 139 IPR011016 GO:0008270
Bda14g00275 208 CDD RING_CH-C4HC3_MARCH 87 139 - -
Bda14g00275 208 PANTHER OS01G0850200 PROTEIN 34 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00275 Bda-Chr14:1858375 Bda06g00296 Bda-Chr6:4954067 1.01E-16 dispersed
Bda10g00414 Bda-Chr10:36376864 Bda14g00275 Bda-Chr14:1858375 7.42E-11 transposed
Bda14g00275 Bda-Chr14:1858375 Bda15g00243 Bda-Chr15:5071312 5.00E-104 wgd
Bda14g00275 Bda-Chr14:1858375 Bda03g01381 Bda-Chr3:50097905 3.30E-55 wgd
Bda14g00275 Bda-Chr14:1858375 Bda05g00947 Bda-Chr5:57993974 6.49E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00275 - - jre:108991946 236.884