Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00300 ATGGTTTTCTCATCAATACCAGTCTATTTGGATCCACCAAACTGGCAACAGCAAACAAATCATCAATCTGGAGTTGGCTGTGAAAACACTCCAACGCCACATTTACCACCACCTTTACCTGTTGCTGGAGGTGGATCCGGTTCGATCAGGCCGAGTTCGTTGGCTGATCGTGCCCGTCTAGCCAAGATGCCACAGCCGGAGGTTGCCCTAAAGTGCCCAAGATGCGAATCCACAAACACGAAGTTTTGTTACTACAATAATTACAACTCTTCTCAACCTCGCCATTTTTGTAAGAACTGCAGGCGATATTGGACGAGAGGAGGTGCCCTGAGGAACGTCCCGGTTGGGGGTGGTAGCAGAAGGAACAAAAGAAGTAAAGCCGGAAATGGATCGAAATCTCCATTGATGGAGAAGAAAACTGCGTCAAGCTCTACTGCTACAGTTTCTTCAAGTAGCTGCACTTCTGATATGGTTGGCCATTTGATCCGTCCAGAATCTTCGCAGCTGCAACTTTTTCCATATCATCATCTGAGTGATTATAGTATCGGGAATGTGGGCATGAGTTTCGCCGGAATCCAACCACCTACTGTTGGCGAAGATAGTGTTAGATTTCCGATCGCTACAGATTCAAGTGGTTGCCCGGGCGGCAGTGGTGATCCCATGTTTTCCTGTGCAATTACTGAAAATTGGAGATTACAACAAGTTCAGCAATTTCCATTTCTATCAAATATGGAAAATTCAAATGGGTTATATGCGTTGGGGTGTTATAATGAAGGTGGCGCAGAGCGACCCAATTATCAGCTTCATCGCTTTTCGAAGCCCTTAGCTTCTGGGGTTTCACGTTTGGTAACAGAGAAAATGGAGGAAAATCAAGGGTTTAATTTTCCGAGAAACTTTCTGGGTGTTCAAGGAAATGATCAATTCTGGGGAGGAAACAATGCCTGGAATGACCTTTCTGGTTTCAGTTCGTCATCCACCAGCCACCTCTAA 990 45.66 MVFSSIPVYLDPPNWQQQTNHQSGVGCENTPTPHLPPPLPVAGGGSGSIRPSSLADRARLAKMPQPEVALKCPRCESTNTKFCYYNNYNSSQPRHFCKNCRRYWTRGGALRNVPVGGGSRRNKRSKAGNGSKSPLMEKKTASSSTATVSSSSCTSDMVGHLIRPESSQLQLFPYHHLSDYSIGNVGMSFAGIQPPTVGEDSVRFPIATDSSGCPGGSGDPMFSCAITENWRLQQVQQFPFLSNMENSNGLYALGCYNEGGAERPNYQLHRFSKPLASGVSRLVTEKMEENQGFNFPRNFLGVQGNDQFWGGNNAWNDLSGFSSSSTSHL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2027799 2028913 - Bda027035.1 Bda14g00300 20351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00300 329 MobiDBLite consensus disorder prediction 111 152 - -
Bda14g00300 329 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 326 - -
Bda14g00300 329 MobiDBLite consensus disorder prediction 135 152 - -
Bda14g00300 329 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Bda14g00300 329 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Bda14g00300 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 326 IPR045174 GO:0003700|GO:0006355
Bda14g00300 329 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00300 - - - vvi:100258172 361.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00153 Bda-Chr9:2388071 Bda14g00300 Bda-Chr14:2027799 3.36E-62 dispersed
Bda14g00300 Bda-Chr14:2027799 Bda06g00517 Bda-Chr6:7438568 5.18E-30 dispersed
Bda14g00300 Bda-Chr14:2027799 Bda05g00969 Bda-Chr5:58157463 3.61E-65 wgd
Bda14g00300 Bda-Chr14:2027799 Bda07g00589 Bda-Chr7:7221890 1.19E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00980 CCT 8 165 C2C2-Dof Transcription Factor Family AT1G29160 56.4 2.9e-46 181.8
Bda09g00805 . 7 140 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.2e-38 155.6
Bda09g00808 . 7 140 C2C2-Dof Transcription Factor Family AT1G29160 52.7 2.9e-38 155.2
Bda07g00980 CCT 8 165 C2C2-Dof Transcription Factor Family AT2G34140 53.7 9.0e-45 176.8
Bda09g00808 . 7 140 C2C2-Dof Transcription Factor Family AT2G34140 54.7 2.2e-38 155.6
Bda09g00805 . 7 140 C2C2-Dof Transcription Factor Family AT2G34140 53.4 8.2e-38 153.7
Bda09g00153 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bda14g00300 . 1 122 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17008 PF02701 zf-Dof 1.40E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00300 Bda_Chr14 FPKM 0.665548 0.0 0.0 0.988323 1.050387 0.79014 1.230262 0.365939 0.64622